GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004427-TA|BGIBMGA004427-PA|undefined
         (191 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   1.4  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   4.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.3  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/38 (26%), Positives = 22/38 (57%)

Query: 63  LASGVLAVYNQVDLEVTSYQWLAIASLATLLFGYGMSW 100
           L SG +++ N+V++ + +   + +  L    FG+ MS+
Sbjct: 51  LESGCVSLKNEVNIMMKNVVDIVLGGLTYWAFGFAMSF 88


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 137 TFPYIEEYVGAYTLFYIFASVNLYGAVYNLF 167
           TF YI +  G   L Y F +   +    NLF
Sbjct: 196 TFAYIADVTGFALLVYDFRNSRSWRITNNLF 226


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 43  ICVTILDMKYLLSLGYAIMALASGVLAVY 71
           +C + +D  Y+++  Y IM +   V  VY
Sbjct: 807 VCNSYVDASYMIAFAYPIMLIV--VCTVY 833


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.143    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,495
Number of Sequences: 429
Number of extensions: 1916
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 191
length of database: 140,377
effective HSP length: 54
effective length of query: 137
effective length of database: 117,211
effective search space: 16057907
effective search space used: 16057907
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 42 (21.0 bits)