GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004425-TA|BGIBMGA004425-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (283 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    28   0.11 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   7.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 182 HLHPSEVEECAAELDAYGVNKTDLIM 207
           H +P + + C  E+++YG    D++M
Sbjct: 166 HYYPLDSQNCTVEIESYGYTVLDVVM 191


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 25  SNAELDEHTRVTNSHVFPYVVAILQRSKY 53
           SNA ++  ++VT S ++   VAI  R +Y
Sbjct: 88  SNASVEPDSKVTYSGLWRVCVAISSRMEY 116


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 4/31 (12%)

Query: 257 TRVSAPDVTSW----IHATLHGHRWKHKSNE 283
           T V   D T W    ++ T+H   W H SNE
Sbjct: 156 TPVCEYDHTWWPYDILNCTIHIASWSHGSNE 186


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 200 VNKTDLIMCLDPPGGSEICVENRNVGAPVV 229
           VN+T   + ++ PG + I V++   GA +V
Sbjct: 541 VNQTVNPVAINIPGDTSIIVDSSTSGATIV 570


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/29 (20%), Positives = 16/29 (55%)

Query: 183 LHPSEVEECAAELDAYGVNKTDLIMCLDP 211
           ++P + +EC  ++++      ++I   DP
Sbjct: 169 IYPHDTQECKLQMESLSHTTDEMIFQWDP 197


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,538
Number of Sequences: 429
Number of extensions: 3334
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 283
length of database: 140,377
effective HSP length: 57
effective length of query: 226
effective length of database: 115,924
effective search space: 26198824
effective search space used: 26198824
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)