GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004423-TA|BGIBMGA004423-PA|undefined
         (510 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                28   0.21 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   2.6  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   4.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   7.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 27.9 bits (59), Expect = 0.21
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 333 TINQLPPAQGYAPPAMMPAQYMQQSGAAPVFGGGLFPQGAAPPYPLYPHHNYATQT 388
           T   LPP+  Y P    P+QY    G++P    G    G     P + HH++ TQ+
Sbjct: 308 TAGFLPPS--YHPHQHHPSQYHPHRGSSPHHQHGNHTMGPTMG-PPHHHHHHQTQS 360


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 16/58 (27%), Positives = 21/58 (36%)

Query: 112 KKLPALETLTITAPAXXXXXXXXSQGQSQRKVSAMVAQQRPVPTDINKKKPLPGQNQQ 169
           KK+P L TL               Q Q  +       QQ+     IN ++P   Q QQ
Sbjct: 390 KKIPDLRTLNTLHSEKLLAFKMTEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQ 447


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 194 PQQTTGAEPRGGSKRYSSLR 213
           PQ+      RGG+K+Y +LR
Sbjct: 40  PQRIHTVRTRGGNKKYRALR 59


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 167 NQQPSSPAPNKSPPLQTK-PQNQTSHPHPQQTTGAE 201
           + Q S+P  + S P   +       HPHP +T G +
Sbjct: 441 HHQHSTPLAHSSYPAAIQIGHTPHHHPHPPETPGPQ 476


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.127    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,645
Number of Sequences: 429
Number of extensions: 5543
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 4
length of query: 510
length of database: 140,377
effective HSP length: 61
effective length of query: 449
effective length of database: 114,208
effective search space: 51279392
effective search space used: 51279392
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 46 (22.6 bits)