GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004420-TA|BGIBMGA004420-PA|IPR001309|Caspase, p20
subunit, IPR002138|Peptidase C14, caspase non-catalytic subunit p10,
IPR002398|Peptidase C14, caspase precursor p45, IPR011600|Peptidase
C14, caspase catalytic
         (356 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    25   1.00 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   1.00 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   1.00 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   7.0  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   9.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   9.3  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 1.00
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 205 CIGIAVLTHGSSDGMLRAKDMQYSEKEILRHFKVHD 240
           C  +  L  G+  G+L     +Y    I +H K+HD
Sbjct: 292 CQPVGTLIVGALAGLLSVLGYKYITPLIQKHLKIHD 327


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.0 bits (52), Expect = 1.00
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 160 EKDVESLTVTFQKFGFEVVEHKDL 183
           E   E++TVTF   G + V+ KD+
Sbjct: 130 EVSSENMTVTFANLGIQCVKKKDI 153


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.0 bits (52), Expect = 1.00
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 160 EKDVESLTVTFQKFGFEVVEHKDL 183
           E   E++TVTF   G + V+ KD+
Sbjct: 130 EVSSENMTVTFANLGIQCVKKKDI 153


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 215 SSDGMLRAKDMQYSEKEI 232
           S D +LRAK + +S+K+I
Sbjct: 304 SHDVLLRAKQIGFSDKQI 321


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 9/29 (31%), Positives = 19/29 (65%)

Query: 178 VEHKDLTKDEVLNEIKEFSSRDLRDYGCI 206
           ++ ++L  D++ + +++ S R LR  GCI
Sbjct: 28  LKQENLNLDDIDSLLEDESERMLRKRGCI 56


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 157 KGTEKDVESLTVTFQKFGFEVVEHKDLTKDEVLNEIKEFSSRDLRD 202
           KGT   VES     +   F+V+   D+T+  +L  I+        D
Sbjct: 112 KGTVTHVESRPSKKEGLQFDVLVKVDMTRQYLLQLIRNLRQSSALD 157


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.132    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,499
Number of Sequences: 429
Number of extensions: 3643
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 356
length of database: 140,377
effective HSP length: 58
effective length of query: 298
effective length of database: 115,495
effective search space: 34417510
effective search space used: 34417510
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)