GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004418-TA|BGIBMGA004418-PA|undefined
         (186 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.2  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   7.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.7  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   9.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 134 MSFGCHYNCQLSLSSKKKNC 153
           MS     +C+L +  +KKNC
Sbjct: 381 MSVDRMQHCELHMQPRKKNC 400


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 134 MSFGCHYNCQLSLSSKKKNC 153
           MS     +C+L +  +KKNC
Sbjct: 381 MSVDRMQHCELHMQPRKKNC 400


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 85  MTSDNEYESNMSESSGEASKPTQRGTKWYKPVECKLQFCSIF 126
           + S N+      E +GE     ++    + P + KL+F ++F
Sbjct: 155 LKSHNDIYCEKYEKNGETYLRIKKHAVKFNPAKVKLRFENLF 196


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 9   LSHNHPAFQTQGSTKIP 25
           L+HN+P F    S   P
Sbjct: 235 LNHNYPPFMLSNSLNFP 251


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 80  FSISGMTSDNEYESNMSESSGEASKPTQRGTKWYKPVECKLQF 122
           + +   +S + Y S + +SS  +  P Q+ T++      K Q+
Sbjct: 948 YIVDESSSSSFYSSFLYKSSESSCNPDQKPTEYLLEDSMKQQY 990


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 53  NSQEPSPTSLDPSRKSEQRSPED 75
           +S   +PTS+  S +SE +  ED
Sbjct: 595 SSASSAPTSVCSSPRSEDKEVED 617


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 114 KPVECKLQFCSIFGLL 129
           K + C LQFC   G++
Sbjct: 162 KSITCALQFCHNAGIV 177


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.126    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,965
Number of Sequences: 429
Number of extensions: 2463
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 186
length of database: 140,377
effective HSP length: 54
effective length of query: 132
effective length of database: 117,211
effective search space: 15471852
effective search space used: 15471852
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)