GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004417-TA|BGIBMGA004417-PA|IPR001907|Peptidase S14, ClpP
         (288 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.59 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.59 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 124 TTPGAHHYTHHHGY 137
           +TPG HH+T  HG+
Sbjct: 410 STPGPHHHTMGHGH 423


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 205 GTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRIPMRKV 248
           G +   S +G+ A  +PP+   SN     ++  +TP+ +   K+
Sbjct: 257 GNNEDSSDSGAAASDRPPASASSNEHEAESEHTSTPNFLSEAKI 300


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 2/16 (12%)

Query: 128 AHHYTHHHG--YQPSP 141
           +HH+ HHH   YQ SP
Sbjct: 72  SHHHLHHHQVLYQQSP 87


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 195 PSVP-RSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRIPMRKVTNTKT 253
           PS+  RS L  G+S PG+         PPS   S ++  +T       R    K    K 
Sbjct: 381 PSIRNRSGLVSGSSTPGTGREHDPAKFPPSFRISRVAAYNTYGRNAGLRYRGPKQNKPKV 440

Query: 254 SIARAAANASKLGVSTP 270
            +      AS L VS P
Sbjct: 441 -LHAIRRGASILRVSMP 456


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,711
Number of Sequences: 429
Number of extensions: 3852
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 288
length of database: 140,377
effective HSP length: 57
effective length of query: 231
effective length of database: 115,924
effective search space: 26778444
effective search space used: 26778444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)