GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004415-TA|BGIBMGA004415-PA|IPR002017|Spectrin repeat
         (1254 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         25   3.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    25   3.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    25   3.9  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    25   5.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   5.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    25   5.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   5.1  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 880 ALGPISTD---SSMVHTQVQQVQVLREEFRSQQPQLTHLEEALHDDILSKQPAFKQLTET 936
           AL P++ +   S +  T +  V    E+FR+   Q   +      +IL  Q + K ++++
Sbjct: 257 ALSPMTNNLYYSPVASTSLYYVNT--EQFRTSDYQQNDIHYEGVQNILDTQSSAKVVSKS 314

Query: 937 ASTLMGLVGD 946
                GLVGD
Sbjct: 315 GVLFFGLVGD 324


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 880 ALGPISTD---SSMVHTQVQQVQVLREEFRSQQPQLTHLEEALHDDILSKQPAFKQLTET 936
           AL P++ +   S +  T +  V    E+FR+   Q   +      +IL  Q + K ++++
Sbjct: 257 ALSPMTNNLYYSPVASTSLYYVNT--EQFRTSDYQQNDIHYEGVQNILDTQSSAKVVSKS 314

Query: 937 ASTLMGLVGD 946
                GLVGD
Sbjct: 315 GVLFFGLVGD 324


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 880 ALGPISTD---SSMVHTQVQQVQVLREEFRSQQPQLTHLEEALHDDILSKQPAFKQLTET 936
           AL P++ +   S +  T +  V    E+FR+   Q   +      +IL  Q + K ++++
Sbjct: 257 ALSPMTNNLYYSPVASTSLYYVNT--EQFRTSDYQQNDIHYEGVQNILDTQSSAKVVSKS 314

Query: 937 ASTLMGLVGD 946
                GLVGD
Sbjct: 315 GVLFFGLVGD 324


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 903 EEFRSQQPQLTHLEEALHDDILSKQPAFKQLTETASTLMGLVGD 946
           ++F   + Q   ++     DIL  Q + K ++ET +   GLV D
Sbjct: 278 KQFTQGKFQANDIQYQGASDILWTQASAKAISETGALFFGLVSD 321


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
            receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 1200 EELVEWLRGVEARLRSAAPPSCEPAAVRAQLRD 1232
            EEL+ W RG +    SA    CEP  ++ Q  D
Sbjct: 433  EELI-WARGTKDIPISACSLPCEPGMIKKQQGD 464


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 903 EEFRSQQPQLTHLEEALHDDILSKQPAFKQLTETASTLMGLVGD 946
           E+F   Q Q  ++     ++IL  Q + K +++      GLVGD
Sbjct: 279 EQFVKSQYQANNVHYQGKENILWTQASAKGISDNGVLFFGLVGD 322


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 933

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 1200 EELVEWLRGVEARLRSAAPPSCEPAAVRAQLRD 1232
            EEL+ W RG +    SA    CEP  ++ Q  D
Sbjct: 523  EELI-WARGTKDIPISACSLPCEPGMIKKQQGD 554


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 291,180
Number of Sequences: 429
Number of extensions: 10482
Number of successful extensions: 38
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 7
length of query: 1254
length of database: 140,377
effective HSP length: 66
effective length of query: 1188
effective length of database: 112,063
effective search space: 133130844
effective search space used: 133130844
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)