GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004413-TA|BGIBMGA004413-PA|undefined
         (146 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.24 
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   4.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   4.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   5.2  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    20   9.2  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    20   9.2  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    20   9.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 0.24
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 19  LTAVNAQVFSDVQVIKKDETIPPAAMTLNVAIKKNLINPHTGEIKHPLTGELISLTD--A 76
           + AVNA+  +D+ +  K+   PP A++ NVA+    I     ++    T EL+  TD   
Sbjct: 81  ILAVNAE--ADITL--KNAGTPPEAVSYNVAVPTKSILEKKPDV---TTVELVDATDPGE 133

Query: 77  INRDLIMAIPYPQTSDTIILEDALEE 102
            N D +  +     S T  L+D++ +
Sbjct: 134 HNGDTVTDVEAGLASRTNPLDDSISQ 159


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 15/72 (20%), Positives = 28/72 (38%)

Query: 2  IDDSKNLIKTNDGSMDLLTAVNAQVFSDVQVIKKDETIPPAAMTLNVAIKKNLINPHTGE 61
          I D +N I+         T +N Q+ +DV   K +       + +  A+KK       G 
Sbjct: 19 IKDFQNAIRMGQSICMAKTGINKQIINDVNDGKINIEDENVQLYIECAMKKFSFVDKDGN 78

Query: 62 IKHPLTGELISL 73
              ++ E+  +
Sbjct: 79 FNEHVSREIAKI 90


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 16/87 (18%)

Query: 19  LTAVNAQVFSDVQVIKKDETIPPAAMTLNVAI-KKNLINPHTGEIKHPLTGELISLTD-- 75
           + AVNA+  +D+ +  K+   PP A++ NVA+  K+++       K P   EL+  TD  
Sbjct: 81  ILAVNAE--ADITL--KNAGTPPEAVSYNVAVPTKSILE------KKP---ELVDATDPG 127

Query: 76  AINRDLIMAIPYPQTSDTIILEDALEE 102
             N D +  +     S T  L+D++ +
Sbjct: 128 EHNGDTVTDVEAGLASRTNPLDDSISQ 154


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 7/34 (20%), Positives = 24/34 (70%)

Query: 5   SKNLIKTNDGSMDLLTAVNAQVFSDVQVIKKDET 38
           +++++K+  G + L+T ++++V + +++ + D T
Sbjct: 345 TESVLKSKIGQVFLITILDSKVSARIEMNEDDNT 378


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 53  NLINPHTGEIKHPLTG 68
           NLI+    +++HP+TG
Sbjct: 117 NLIDTKCYKLEHPVTG 132


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 53  NLINPHTGEIKHPLTG 68
           NLI+    +++HP+TG
Sbjct: 122 NLIDTKCYKLEHPVTG 137


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 53  NLINPHTGEIKHPLTG 68
           NLI+    +++HP+TG
Sbjct: 122 NLIDTKCYKLEHPVTG 137


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.134    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,607
Number of Sequences: 429
Number of extensions: 1220
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 146
length of database: 140,377
effective HSP length: 52
effective length of query: 94
effective length of database: 118,069
effective search space: 11098486
effective search space used: 11098486
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)