GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004412-TA|BGIBMGA004412-PA|IPR002017|Spectrin repeat
         (758 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.43 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            25   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   4.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   7.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   9.2  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   9.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 27.5 bits (58), Expect = 0.43
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 142 EFTLDQGERLLKGMQDLREELNTHGAAVSRLVEEAQEVRPVKLRRAPVTR 191
           E  L+  +R  +  +D+  ELNT G A++ L + AQ  +  KL   P  R
Sbjct: 149 EMLLEHKKR--RARRDIHPELNTQGIALADLTQRAQIGQKHKLLIGPSIR 196



 Score = 25.4 bits (53), Expect = 1.7
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 628 NLLTSVVERTPKIEKVNVDGGRFIREAKINSSRCQRYTEWLCEEVHPS 675
           N  +S  + +P IE ++VD G     A+    R    TEW   +V PS
Sbjct: 546 NTNSSARDSSPAIESISVDSGSINTVAEWEPPRALWPTEW---KVRPS 590


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 445 KWNDLHSKSQLFVERLKFVEIVVNSVEEN 473
           KWND+  + + F+  + F  + V+ V+EN
Sbjct: 40  KWNDIAKECEQFLGPVGFGGVQVSPVQEN 68


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 703 DRIPVGSDAVARELDELNAKYQRLLDM---LYERLRRIAAAN 741
           D +P G  A  R+L E++  Y  L D+   ++ RL ++   N
Sbjct: 274 DSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLN 315


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 8/39 (20%), Positives = 18/39 (46%)

Query: 566 RWSNVCTQLAERLRSCEAAYQLLRNYNAGLEKEAEWIDD 604
           ++  VCTQ+   ++S      + R +    +K    +D+
Sbjct: 191 KFHRVCTQIGSSMKSVGEVMAIGRKFEEAFQKALRMVDE 229


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 7/20 (35%), Positives = 15/20 (75%)

Query: 491 PNDIEILKDIHEDLLRMQVA 510
           P D+  +KDI+E +++++ A
Sbjct: 349 PEDLPFIKDIYETVIKLEGA 368


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 7/20 (35%), Positives = 15/20 (75%)

Query: 491 PNDIEILKDIHEDLLRMQVA 510
           P D+  +KDI+E +++++ A
Sbjct: 55  PEDLPFIKDIYETVIKLEGA 74


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.133    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,272
Number of Sequences: 429
Number of extensions: 7479
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 7
length of query: 758
length of database: 140,377
effective HSP length: 63
effective length of query: 695
effective length of database: 113,350
effective search space: 78778250
effective search space used: 78778250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)