GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004409-TA|BGIBMGA004409-PA|IPR001589|Actin-binding,
actinin-type, IPR001715|Calponin-like actin-binding
         (141 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   3.8  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   3.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   3.8  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   5.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   6.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    20   8.7  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 123 VGRCVVLWDFEHTKT 137
           VG C V+W F  +K+
Sbjct: 73  VGNCCVIWIFSTSKS 87


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)

Query: 113 ILHFQTPHQFVGR-CVVLW 130
           IL F  PHQF+ R C  L+
Sbjct: 89  ILTFVVPHQFIKRICSALF 107


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 123 VGRCVVLWDFEHTKT 137
           VG C V+W F  +K+
Sbjct: 73  VGNCCVIWIFSTSKS 87


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 61 PRERGRMRFHMLQNVQMALDF 81
          PR RGR  +   Q +++  +F
Sbjct: 7  PRRRGRQTYTRFQTLELEKEF 27


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 115 HFQTPHQFVGRCVVLWDFEHTKTPK 139
           H+ T    + +   +WD++ T  PK
Sbjct: 304 HYSTRAIVIEKGQSIWDYDSTYIPK 328


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 19  VINNQPCCPPQ 29
           V NNQP C P+
Sbjct: 149 VNNNQPMCSPK 159


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.144    0.465 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,732
Number of Sequences: 429
Number of extensions: 1554
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 141
length of database: 140,377
effective HSP length: 52
effective length of query: 89
effective length of database: 118,069
effective search space: 10508141
effective search space used: 10508141
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 40 (20.2 bits)