GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004402-TA|BGIBMGA004402-PA|IPR004943|Lepidopteran low
molecular weight lipoprotein
         (246 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    26   0.28 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    25   0.49 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.9  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 16/56 (28%), Positives = 24/56 (42%)

Query: 29  PNQDLEEKLYNSILTGNYDSAVAQSLEHERQNKGSVIQNVVNNLIVDKRQNTMEYC 84
           P+QD  ++   +    N D+     LE E  N   V      N IVD+ +N +  C
Sbjct: 53  PHQDHNKEKSKNNHHCNQDTEKLNQLEIESDNSKEVNDKKEENFIVDRLRNDLFEC 108


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 31  QDLE---EKLYNSILTGNYDSAVAQSLEHERQNKGSVIQNVVNNLIVDKRQN 79
           QDLE   +++Y +I TG+  +   + ++   +N   V+ N++   I+   QN
Sbjct: 308 QDLERWRDRIYEAIHTGSVINTRGERIQLTEKNGIDVLGNIMEASILSPNQN 359


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated
          chloride channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 31 QDLEEKLYNSILTGNYDSAVAQSLEHERQNKGSVIQNVVNNLIVDKRQNTMEYCYKL 87
          ++ E+++ ++IL G YD+ +  S E+       V  N+    I      TMEY  +L
Sbjct: 29 REKEKEVLDNIL-GGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTMEYSVQL 84


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)

Query: 56  HERQNKGSVIQNVVNNLIVDK 76
           H R  +G+ +  +V +L++DK
Sbjct: 300 HHRGVRGTRVPGIVRSLVLDK 320


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,755
Number of Sequences: 429
Number of extensions: 3478
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 246
length of database: 140,377
effective HSP length: 56
effective length of query: 190
effective length of database: 116,353
effective search space: 22107070
effective search space used: 22107070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)