GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004400-TA|BGIBMGA004400-PA|IPR004943|Lepidopteran low
molecular weight lipoprotein
         (384 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   4.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.8  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 37  RMLVWDATCSDTLVPSHLHGTNNRAMQIQSEYVFVPFGVETLGPWGSSAIRLFKELAKTL 96
           R+++     S T++    HGT    +   + Y   P  +   G W +    LFK+ AK L
Sbjct: 634 RVILSSGAKSPTVLEELTHGT----LAASTLYSKRPDLLHLFGSWSNRPNLLFKDEAKDL 689

Query: 97  LDI 99
           + +
Sbjct: 690 VSV 692


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 37  RMLVWDATCSDTLVPSHLHGTNNRAMQIQSEYVFVPFGVETLGPWGSSAIRLFKELAKTL 96
           R+++     S T++    HGT    +   + Y   P  +   G W +    LFK+ AK L
Sbjct: 634 RVILSSGAKSPTVLEELTHGT----LAASTLYSKRPDLLHLFGSWSNRPNLLFKDEAKDL 689

Query: 97  LDI 99
           + +
Sbjct: 690 VSV 692


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 37  RMLVWDATCSDTLVPSHLHGTNNRAMQIQSEYVFVPFGVETLGPWGSSAIRLFKELAKTL 96
           R+++     S T++    HGT    +   + Y   P  +   G W +    LFK+ AK L
Sbjct: 634 RVILSSGAKSPTVLEELTHGT----LAASTLYSKRPDLLHLFGSWSNRPNLLFKDEAKDL 689

Query: 97  LDI 99
           + +
Sbjct: 690 VSV 692


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 220 RECFPVEFRLIFAENNIKLMYKRDGLALTLDDENSNDGRLAYGDGKDKTSPKVS 273
           R    +   L   E  IK+ ++     +    EN + G    GDG  + SP+ S
Sbjct: 298 RRRIEIAHALCLTERQIKIWFQNR--RMKWKKENKSKGTPGSGDGDTEISPQTS 349


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 144 LYANETSVSDSKLEDDLYNSILVADY 169
           L  NET  SD   +  +  SI+V+DY
Sbjct: 969 LNVNETVCSDYFSQGGVIESIMVSDY 994


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,176
Number of Sequences: 429
Number of extensions: 5643
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 5
length of query: 384
length of database: 140,377
effective HSP length: 59
effective length of query: 325
effective length of database: 115,066
effective search space: 37396450
effective search space used: 37396450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)