GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004384-TA|BGIBMGA004384-PA|undefined
         (133 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    26   0.16 
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   0.21 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   0.21 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.21 

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.16
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 47  QFEVVMKANGWSKSQAMTALTLGLREQALTIVDALGKDTTYEQLVEALESRYEDVHLE 104
           +FE  +  NG ++  A+ A TLG+++  + +      D  Y       E+R+E++  E
Sbjct: 122 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYS------EARFEEIKKE 173


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 25.4 bits (53), Expect = 0.21
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 47  QFEVVMKANGWSKSQAMTALTLGLREQALTIVDALGKDTTYEQLVEALESRYEDVHLE 104
           +FE  +  NG ++  A+ A TLG+++    IV     D+T        E+R+E++  E
Sbjct: 49  EFEAGISKNGQTREHALLAFTLGVKQ---LIVGVNKMDSTEPPY---SETRFEEIKKE 100


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 25.4 bits (53), Expect = 0.21
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 47  QFEVVMKANGWSKSQAMTALTLGLREQALTIVDALGKDTTYEQLVEALESRYEDVHLE 104
           +FE  +  NG ++  A+ A TLG+++    IV     D+T        E+R+E++  E
Sbjct: 65  EFEAGISKNGQTREHALLAFTLGVKQ---LIVGVNKMDSTEPPY---SETRFEEIKKE 116


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.21
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 47  QFEVVMKANGWSKSQAMTALTLGLREQALTIVDALGKDTTYEQLVEALESRYEDVHLE 104
           +FE  +  NG ++  A+ A TLG+++    IV     D+T        E+R+E++  E
Sbjct: 122 EFEAGISKNGQTREHALLAFTLGVKQ---LIVGVNKMDSTEPPY---SETRFEEIKKE 173


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.135    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,747
Number of Sequences: 429
Number of extensions: 1040
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 133
length of database: 140,377
effective HSP length: 52
effective length of query: 81
effective length of database: 118,069
effective search space:  9563589
effective search space used:  9563589
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 40 (20.2 bits)