GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004376-TA|BGIBMGA004376-PA|IPR000243|Peptidase T1A,
proteasome beta-subunit, IPR001353|20S proteasome, A and B subunits
         (283 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    29   0.047
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.1  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 29.1 bits (62), Expect = 0.047
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 99  IGSQSMKKIVEINDYL-LGTLAGGAADCVYWDRVLAKQCRLYELRNRERISVAAASKLMA 157
           + +QS  K+V  N  L LG +      CV   +VL ++      +N E + +  + K+M 
Sbjct: 305 LNTQSFGKVVSKNGVLFLGLVGNSGIACVNEHQVLQRESFDVVAQNEETLQMIVSMKIME 364

Query: 158 NM 159
           N+
Sbjct: 365 NL 366


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 9   LNEKINLKPVDSLASFNNDITGYSENFVNSAQLASPPFANPAETLAHFNTKDETGKEIK 67
           +N+K+  K  D +   ++  + YS     S++ +  P   P E L   + K + GK  K
Sbjct: 938 VNKKV-YKQNDYIVDESSSSSFYSSFLYKSSESSCNPDQKPTEYLLEDSMKQQYGKRRK 995


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,891
Number of Sequences: 429
Number of extensions: 3025
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 283
length of database: 140,377
effective HSP length: 57
effective length of query: 226
effective length of database: 115,924
effective search space: 26198824
effective search space used: 26198824
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)