GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004374-TA|BGIBMGA004374-PA|IPR000530|Ribosomal protein
S12E, IPR004038|Ribosomal protein L7Ae/L30e/S12e/Gadd45
         (139 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   0.69 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    20   8.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   8.5  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 0.69
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 70  KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARK--IVGCSCV 116
           KL+  +  E    L +VD  + LGE   L   D   K +K  + GC CV
Sbjct: 564 KLIDNIKKEIYDILPEVDVEEILGEAKVLQNFDIKDKNKKVNVAGCRCV 612



 Score = 22.6 bits (46), Expect = 1.6
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 5   EVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGL 42
           E +V  N  +   N  VNVA    +K  L+  GL H L
Sbjct: 588 EAKVLQNFDIKDKNKKVNVAGCRCVKGILLKSGLYHVL 625


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 517

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 42 LHEAAKALDKRQAVLC 57
          +H+A K L++R   LC
Sbjct: 79 IHDAYKDLNQRYGALC 94


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 17  NNMDVNVALQEVLKTALIHGGLV 39
           NN D N  +    K  + H GLV
Sbjct: 119 NNADGNFEVTLATKATIYHQGLV 141


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,016
Number of Sequences: 429
Number of extensions: 1263
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 139
length of database: 140,377
effective HSP length: 52
effective length of query: 87
effective length of database: 118,069
effective search space: 10272003
effective search space used: 10272003
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)