GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004370-TA|BGIBMGA004370-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site, IPR009003|Peptidase,
trypsin-like serine and cysteine
         (335 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.53 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   2.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 244 HQLRSTKYDPEDNVLVACDQWLPRQWGYFICVNNIYEY 281
           H++RST   P     V   + +P  WG  I V N Y Y
Sbjct: 526 HEIRSTDVIPGTQEHVCGVKGIPCSWGRAINVANRYVY 563


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 210 GPLLTQIAQPDQPIGRDIKFASLGHIDDQQIFTNHQLRSTKYDPEDNVLVAC 261
           G +   I QPD P  + I+  S G    ++      LR+     +D   V+C
Sbjct: 263 GQVRVTIKQPDTPEEKYIRTLSKGDFFGEKALQGDDLRTANIIADDPEGVSC 314


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.139    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,002
Number of Sequences: 429
Number of extensions: 4197
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 2
length of query: 335
length of database: 140,377
effective HSP length: 58
effective length of query: 277
effective length of database: 115,495
effective search space: 31992115
effective search space used: 31992115
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)