GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004367-TA|BGIBMGA004367-PA|IPR000910|HMG1/2 (high
mobility group) box, IPR009071|High mobility group box
         (133 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    26   0.12 
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    26   0.12 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   4.5  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 26.2 bits (55), Expect = 0.12
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 18  RTYEQYVQGAVENSADSVQDQTSPE-LVWSTLPYGIDYRTPYDYRNPYD 65
           R Y +Y + + E S D  + +TS E  + S+L     Y    +Y N Y+
Sbjct: 54  REYRKYRETSKERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYN 102


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 26.2 bits (55), Expect = 0.12
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 18  RTYEQYVQGAVENSADSVQDQTSPE-LVWSTLPYGIDYRTPYDYRNPYD 65
           R Y +Y + + E S D  + +TS E  + S+L     Y    +Y N Y+
Sbjct: 54  REYRKYRETSKERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYN 102


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor
          protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)

Query: 37 DQTSPE-LVWSTLPYGIDYRTP 57
          D T  E L W+  P+G +  TP
Sbjct: 19 DTTQEEKLEWTKYPFGAEANTP 40


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.130    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,713
Number of Sequences: 429
Number of extensions: 1790
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 133
length of database: 140,377
effective HSP length: 52
effective length of query: 81
effective length of database: 118,069
effective search space:  9563589
effective search space used:  9563589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)