GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004366-TA|BGIBMGA004366-PA|IPR001395|Aldo/keto reductase
         (181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch...    52   7e-08
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    36   0.003
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    29   0.30 
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    29   0.30 
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    27   1.6  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    27   2.1  
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po...    27   2.1  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    26   3.8  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    26   3.8  
SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.8  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    25   6.6  
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    25   6.6  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   8.7  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   8.7  

>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 287

 Score = 51.6 bits (118), Expect = 7e-08
 Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 17/174 (9%)

Query: 5   ERKNLKIGVKIFINEDSTVALKESLENALQTEYIDNVILSYNPDFLNTVEAGNEADLRNS 64
           +++  +I VK+F  +   + +K+  E   Q  Y  N+ + +  DF++T+           
Sbjct: 76  KQEEYEIIVKLFFLDGENIDIKKREETLSQVFY--NLHMLFGIDFVSTLVVSFPHITFLK 133

Query: 65  YSAKTSPISLGSNVAKIPSTEIEADSEADARKCEAILPGIKVLWAVLEDYVKEGRVKQLG 124
            S  +S   +  ++ +IP  EI+  S  D              W +LE+ V EG++  LG
Sbjct: 134 ESGNSSSNEIYDSIDEIPPQEIQ--SWVDT-------------WKLLEEKVGEGKIGTLG 178

Query: 125 VADVGGGCLRVLHAWSRVRPAIAQINLASCCVVPPALHAFCRANDVQLLTHADP 178
           V++ G   L+ L +   V P   QIN+   C +P  L  F   + ++L  H+DP
Sbjct: 179 VSEFGVNELQRLISSVNVVPESTQINIGQNCKLPNDLLNFADRHHLKLFFHSDP 232


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 108 WAVLEDYVKEGRVKQLGVADVGGGCLR-VLHAWSRVRPAIAQINLASCCVVPPALHAFCR 166
           W  LE  V+EG+++ +GV++ G   ++ +L +  ++ P + QI L   C     +  +C 
Sbjct: 121 WKALEKGVEEGKLRAIGVSNFGPHHIQELLDSHPKIIPCVNQIELHPFCSQQKVVD-YCE 179

Query: 167 ANDVQLLTHA 176
           +  +QL  +A
Sbjct: 180 SKGIQLAAYA 189


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 12/48 (25%), Positives = 28/48 (58%)

Query: 104 IKVLWAVLEDYVKEGRVKQLGVADVGGGCLRVLHAWSRVRPAIAQINL 151
           I+  W  +E+ ++ G+V+ +G+++     L  +   ++V+P I Q+ L
Sbjct: 144 IEETWQAMEELLETGKVRYIGISNFNNEYLDRVLKIAKVKPTIHQMEL 191


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 12/48 (25%), Positives = 28/48 (58%)

Query: 104 IKVLWAVLEDYVKEGRVKQLGVADVGGGCLRVLHAWSRVRPAIAQINL 151
           I+  W  +E  ++ G+V+ +G+++     L  +   ++V+PA+ Q+ L
Sbjct: 145 IEETWKAMEKLLETGKVRHIGLSNFNDTNLERILKVAKVKPAVHQMEL 192


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 108 WAVLEDYVKEGRVKQLGVADVGGGCLRVLHAWSRVRPAIAQINLAS 153
           W  L  + KEGR+ ++GV++     L  + +     PAI Q+  ++
Sbjct: 122 WRALLQHQKEGRINKIGVSNYNIHHLEEIISLGLPLPAINQVEFSA 167


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 57  NEADLRNSYSAKTSPISLGSNVAKIPSTEIEADS 90
           NE    +S SAK  P+S+    + +P++ +E +S
Sbjct: 260 NETPASSSSSAKARPVSVPDMSSPVPASSVEYES 293


>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/93 (15%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 86  IEADSEADARKCEAILPGIKV--LWAVLEDYVKEGRVKQLGVADVGGGCLRVLHAWSRVR 143
           +    + D  +C  + P + +      L+ +V  G++  +G+++V    ++  HA   + 
Sbjct: 111 LRGTKKLDLFQCARVDPNVPIETTMKTLKGFVDSGKISCVGLSEVSAETIKRAHAVVPIA 170

Query: 144 PAIAQINLASCCVVPPALHAFCRANDVQLLTHA 176
               + +L S  +    +   CR   + ++ ++
Sbjct: 171 AVEVEYSLFSRDIETNGIMDICRKLSIPIIAYS 203


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 84  TEIEADSEADARKCEAILPGIKVLWAVLEDYVKEGRVKQLGVADVGGGCLRVLHAWSRVR 143
           T+   D       CEA++PG+K   A+++  V EG +  + +     G L +LH   R +
Sbjct: 263 TKFPNDKRFGLEGCEAMVPGMK---ALIDRSVDEG-ISNIVIGMAHRGRLNLLHNIVR-K 317

Query: 144 PAIA 147
           PA A
Sbjct: 318 PAQA 321


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 13  VKIFIN-EDSTVALKESLENALQTEYIDNVILSYNPDFLNT 52
           V +F++  D  + L  S EN ++  YID  +    P FLN+
Sbjct: 542 VTVFLDAHDLVLNLNFSNENYIEKTYIDEFLDFIQPPFLNS 582


>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 7  KNLKIGVKIFINEDSTVALKESLENALQTEYIDNVILSYNPDFLNTVE 54
          ++  I   IF++  S  A+  +L NAL+   +D  +L Y     N +E
Sbjct: 16 RSTSIEYPIFVHSGSISAMLLTLVNALECNDVDEGVLVYPTGSTNPME 63


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 4   EERKNLKIGVKIFINEDSTVALKESLE 30
           EE K L+  V  ++ +DS + L +SLE
Sbjct: 307 EEEKQLRSKVLFYLKQDSFIQLCQSLE 333


>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 4/37 (10%)

Query: 57  NEADLRNSYSAKTSPISLGSNVAKIPSTEIEADSEAD 93
           +E D ++ ++A T    LG  +  +PST +  DS+ D
Sbjct: 101 DETDSKDDFTAGT----LGDTLGTLPSTRVSKDSKDD 133


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 96  KCEAILPGIKVLWAVLEDYVKEGRVKQLGVADV 128
           KC + L G+K+L   L+++V+E  ++ + +  V
Sbjct: 64  KCFSTLLGLKLLCVRLDNFVQEANLQNIHLVTV 96


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 38  IDNVILSYNP-DFLNTVEAGNEADLRNSYSAKTSPISLGSNVAKIPSTEIEADSEADARK 96
           IDN+    +P D     E G   D  +  + K    +L +  A +P  EIE     D +K
Sbjct: 333 IDNIWAHLSPSDEELGKELGKYKDKLDEQTFKAKGNAL-TMAAPLPDDEIEDGETMDGQK 391

Query: 97  CEAILPGIK 105
            EA+ P IK
Sbjct: 392 AEAV-PEIK 399


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.131    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 818,645
Number of Sequences: 5004
Number of extensions: 31308
Number of successful extensions: 97
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 16
length of query: 181
length of database: 2,362,478
effective HSP length: 69
effective length of query: 112
effective length of database: 2,017,202
effective search space: 225926624
effective search space used: 225926624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)