GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004363-TA|BGIBMGA004363-PA|undefined
         (168 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.52 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    25   0.52 
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    25   0.52 
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   4.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.4  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   8.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 0.52
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 65  KAPSLLNDEMFVEAKKRIE-DVDIMGDPNSTVSVDFKVQSSEFGDSESLSDKEHSAESQE 123
           K+PSL +   ++   + I   + +    +  + VD++ +  EFGDS+    +    E   
Sbjct: 227 KSPSLTSLNAYLIKNQTITCPIKVSWRADGQIMVDYEDEFDEFGDSKCSLCQRRFEEQGN 286

Query: 124 DGVHKIDL 131
               K+DL
Sbjct: 287 YSCLKVDL 294


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 24.6 bits (51), Expect = 0.52
 Identities = 12/48 (25%), Positives = 25/48 (52%)

Query: 97  VDFKVQSSEFGDSESLSDKEHSAESQEDGVHKIDLEAFGRQLKLVLKK 144
           V+ +++ S+ G S ++S      + +   VH + +     QLK ++KK
Sbjct: 428 VEHRIRHSQIGISRAMSALRILEKHELANVHPVGINPGKMQLKNIIKK 475


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced
          protein 75 protein.
          Length = 36

 Score = 24.6 bits (51), Expect = 0.52
 Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)

Query: 21 YHLVQLTHHLARRNIPT 37
          YH+ QL HHL+  N+PT
Sbjct: 5  YHVAQLPHHLS-PNMPT 20


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 8/43 (18%), Positives = 24/43 (55%)

Query: 105 EFGDSESLSDKEHSAESQEDGVHKIDLEAFGRQLKLVLKKQEG 147
           EF ++  L+++     S++ G+++  ++ + +  +  +KK  G
Sbjct: 38  EFAENRYLTERRRQQLSRDLGLNEAQIKIWFQNKRAKIKKASG 80


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 52   PHLKTEKVTKGGYKAPSLLNDEMFVEAKKRIEDVDIMGDPN 92
            P L  +      Y+ PS        E  +R+  VD+   P+
Sbjct: 1342 PRLAQDSSEDESYRGPSASGGRPVPERPERVPTVDLSPSPS 1382


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 35   IPTSHPANSNSADSGKTPHLK 55
            + +S   +SN  D+GK  H++
Sbjct: 1792 LTSSRTESSNQLDAGKLKHIR 1812


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 35   IPTSHPANSNSADSGKTPHLK 55
            + +S   +SN  D+GK  H++
Sbjct: 1788 LTSSRTESSNQLDAGKLKHIR 1808


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 37  TSHPANSNSADSGKTPHLKTEKVTKGGYKAPSLLNDE 73
           T H    ++ +S  +     E+ T   +  PSL++DE
Sbjct: 242 TRHREADDAEESVSSETNHNERSTPRSHAKPSLIDDE 278


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.129    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,823
Number of Sequences: 429
Number of extensions: 1791
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 168
length of database: 140,377
effective HSP length: 53
effective length of query: 115
effective length of database: 117,640
effective search space: 13528600
effective search space used: 13528600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)