GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004362-TA|BGIBMGA004362-PA|undefined
         (105 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.14 
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   1.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   2.3  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   4.1  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    20   5.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    20   5.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.4 bits (53), Expect = 0.14
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 11  NLFAESKQRLAERVQVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQIETSEEN 68
           N F++ ++R   +  +N N I S         K  + +     +++S+   I +SEEN
Sbjct: 327 NPFSDVEERRVSKTAMNSNQIVSDNSLSSSEEKLKQDILNLRTDISSSSSSISSSEEN 384


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 7   SSARNLFAESKQRLAERV 24
           S  RN+F E+ + +AE+V
Sbjct: 95  SERRNIFGENDELIAEKV 112


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 25  QVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQI 62
           +VN+  +   A  I+    ++ LLTK A +    E  I
Sbjct: 640 KVNLTRVDMYANMIETMELTSLLLTKVAEDRPLPEFYI 677


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 20  LAERVQVNMNNISSLARQI 38
           LA R+Q   NNI  + +QI
Sbjct: 330 LAVRIQRQENNIRPMVKQI 348


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 10  RNLFAESKQRLAERVQVNMNNISSL 34
           R    E +QR  ER Q  + + SSL
Sbjct: 177 REAVQEERQRTKERDQSEVESTSSL 201


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 10  RNLFAESKQRLAERVQVNMNNISSL 34
           R    E +QR  ER Q  + + SSL
Sbjct: 177 REAVQEERQRTKERDQSEVESTSSL 201


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.117    0.287 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,601
Number of Sequences: 429
Number of extensions: 434
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 105
length of database: 140,377
effective HSP length: 50
effective length of query: 55
effective length of database: 118,927
effective search space:  6540985
effective search space used:  6540985
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.0 bits)
S2: 38 (19.4 bits)