GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004360-TA|BGIBMGA004360-PA|IPR005189|Focal adhesion
targeting region
         (234 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    25   0.79 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   0.79 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.2  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   5.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.4  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 130 TSQIVVTEHVPKEHSSLPATSNRVS-ALIHNYNLYGNVRDQHIYGNTEVV 178
           TS+    + + +E S  P   + +S   IHN N Y N  ++ +Y N   +
Sbjct: 284 TSKERSRDRMERERSKEPKIISSLSNKTIHNNNNYNNYNNKKLYYNINYI 333



 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 141 KEHSSLPATSNRVSALIHNYNLYGNVRDQHIYGNTEVVPL 180
           KE   + + SN+     +NYN Y N +  +     E +P+
Sbjct: 299 KEPKIISSLSNKTIHNNNNYNNYNNKKLYYNINYIEQIPV 338


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 59  DRLANIDWRAALAEQPSPQPQNQTLTSQNQVYAAQSVTFTPQNPILS--NQSSVQ-EEEI 115
           DR  + +  + L++    Q QN  LT   Q+Y++     TP+    S  +  SV+ + EI
Sbjct: 117 DRRLHDNSPSFLSDHSRDQEQNLYLTPSPQMYSSGGEEITPRQSHQSYHHMDSVEYKPEI 176

Query: 116 PPPKPD 121
              KPD
Sbjct: 177 MEYKPD 182


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 184 ASVDDSRIDATSTETVRSRVQA 205
           AS+DDS  D +S  TV S+ ++
Sbjct: 565 ASIDDSDPDPSSEPTVHSQSES 586


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/40 (32%), Positives = 16/40 (40%)

Query: 77   QPQNQTLTSQNQVYAAQSVTFTPQNPILSNQSSVQEEEIP 116
            QPQ Q    Q Q    QS     Q P    Q   Q+++ P
Sbjct: 1504 QPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQP 1543


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 184 ASVDDSRIDATSTETVRSR 202
           AS+DDS  D +S  TV S+
Sbjct: 117 ASIDDSDPDPSSEPTVHSQ 135


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 84   TSQNQVYAAQSVTFTPQNPILSNQSSVQEEEIPP 117
            T Q  + +   +  +P +P+LS ++  Q   IPP
Sbjct: 1470 TYQLYLTSHNKIGSSPSSPVLSVRTQGQAPGIPP 1503


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 84   TSQNQVYAAQSVTFTPQNPILSNQSSVQEEEIPP 117
            T Q  + +   +  +P +P+LS ++  Q   IPP
Sbjct: 1466 TYQLYLTSHNKIGSSPSSPVLSVRTQGQAPGIPP 1499


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.125    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,996
Number of Sequences: 429
Number of extensions: 3357
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 234
length of database: 140,377
effective HSP length: 56
effective length of query: 178
effective length of database: 116,353
effective search space: 20710834
effective search space used: 20710834
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)