GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004357-TA|BGIBMGA004357-PA|undefined
         (143 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p...    32   0.029
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    27   1.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   2.6  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   2.6  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    25   3.4  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    25   3.4  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    25   4.5  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   4.5  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    25   4.5  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   5.9  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    24   7.8  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    24   7.8  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    24   7.8  
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    24   7.8  
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    24   7.8  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    24   7.8  

>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 208

 Score = 32.3 bits (70), Expect = 0.029
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 5/52 (9%)

Query: 74  LEVEYEKLNLDSKPPIREKKVEEVRLRAKKQRQPRPNSLQL----LLCPSSS 121
           L+ E +++N +SKPP+++++V E  + +K Q  P    L+L    LL PSSS
Sbjct: 96  LKRENKEVNANSKPPVKQQEVIESTVISKSQ-SPSVKQLKLTESTLLAPSSS 146


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 50  TPDLLRTRSFIKDRLDHLDLEENILEVEYEKLNLDSKPPI 89
           TP+ +  R F+++    +D     L+V   K   D KPP+
Sbjct: 744 TPETVNLRDFVQNANSWIDSVNECLKVASLKRKKDKKPPL 783


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 49   MTPDLLRTRSFIKDRLDHLDLEENILEVEYEKLNLDS 85
            M PD+L   S++   LDH + E  +L + Y  ++ D+
Sbjct: 4357 MVPDILVPVSYLPRSLDHSENEGKLLNI-YNSISADN 4392


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 20 WRRSNEYTKVGFEPRRPPTSPLEIRRIFNMTPDLLRTRSFIKDRLDHLDLEENILEVEY 78
          +RR   Y+ +G +P  PP  PL ++ + ++  DL+ ++ +  +  D + L ++ LE  Y
Sbjct: 19 YRRRIPYS-LGADPL-PPVHPLSLKNLVDIDTDLISSQLY--ELYDSIILNDSGLERRY 73


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 95  EEVRLRAKKQRQPRPNSLQLLLC 117
           +E+ +  KK   P+P  +QL++C
Sbjct: 4   KEIDINQKKNVLPKPEDIQLIIC 26


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 77  EYEKLNLDSKPPIREKKVEEVRLRAKK-QRQPRPNSLQLLLCPSSS 121
           E   L+ +    IRE K E+ RL +KK +RQ +P S   LL  +SS
Sbjct: 84  ERPPLSAEEAKRIREVK-EKDRLESKKNERQGKPRSYNELLRQASS 128


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 32  EPRRPPTSPLEIRRIFNMTPDLLRTRSFIKDRLDHLDLEENILEVEYEKLNLDSKPPIRE 91
           E + P  + LE + + N+  DL R    ++   + ++L+  + E   +K +L  +  + E
Sbjct: 51  ETKNPKLASLEFQ-LENLKNDLKRKE--LEFEREQIELQRKLAEEHEQKNSLQLRLTLVE 107

Query: 92  KKVEEVRLRAKKQ 104
           K++EE     +K+
Sbjct: 108 KQLEEQSTSYQKE 120


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 77   EYEKLNL-DSKPPIREKKVEEVRLRAKKQRQPRP 109
            E  KL+L  +KPPI +K  E+  +R K     RP
Sbjct: 1628 ESSKLSLIHNKPPIYQKVSEQQNVRPKSSGVSRP 1661


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 67  LDLEENILEVE-----YEKLNLDSKPPIREKKVEEVRLRAKKQRQPRPNSLQLLLCPSSS 121
           + LEEN+ E +      + L+++ +    +K VEE+R++  +        ++     + S
Sbjct: 1   MSLEENVKEAKNAFNILQTLSVEDRDDALDKIVEELRIKKSEVLAANAEDMKAAKLLAES 60

Query: 122 GHYSSS 127
           G  SSS
Sbjct: 61  GKLSSS 66


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 54  LRTRSFIKDRLDHLDLEENILE-VEYEKLNLDSKPPIREKKVEEVRLRAKKQRQPRPNS 111
           LR    I  +  H+  E+   + ++ +  N+   P I EK+VE+ +L    Q+   P +
Sbjct: 83  LRKEKMIPKKHSHVKQEKRFSKSLQLQDPNVWPSPEIAEKQVEDRKLSDDSQKPLAPKA 141


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 16/61 (26%), Positives = 26/61 (42%)

Query: 18  RLWRRSNEYTKVGFEPRRPPTSPLEIRRIFNMTPDLLRTRSFIKDRLDHLDLEENILEVE 77
           +LW   + +  V    R+  T  LE  R  + T D+L  +     R     L +N ++V 
Sbjct: 502 KLWSLKSSFDFVPGTTRKVTTLKLEQTRQIDFTDDVLAVKISPDGRFVAASLLDNTVKVY 561

Query: 78  Y 78
           Y
Sbjct: 562 Y 562


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 119 SSSGHYSSSTWRYTRARSKR 138
           S S H  +  W+++R+RSKR
Sbjct: 566 SESKHSHTLPWQFSRSRSKR 585


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 78  YEKLNLDSKPPIREKKVEEV 97
           + KL++DS PPI E K  E+
Sbjct: 164 FGKLDVDSLPPITESKAIEL 183


>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 41  LEIRRIFNMTPDLLRTRSFIKDRLDHLDLEENIL 74
           L+  +I+ M   LL+T  F +D+L H+  E ++L
Sbjct: 113 LDTGKIYAMK-SLLKTEMFKRDQLAHVKAERDLL 145


>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 339

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 66 HLDLEENILEVEYE-KLNLDSKPPIREKKVEEVR 98
          HL LE   LE E + KL+  +K P+++  +EE++
Sbjct: 17 HLHLE-GTLEAELKLKLSHRNKIPLKQSSIEEIK 49


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 17/60 (28%), Positives = 24/60 (40%)

Query: 78  YEKLNLDSKPPIREKKVEEVRLRAKKQRQPRPNSLQLLLCPSSSGHYSSSTWRYTRARSK 137
           Y K N D KP   E   +  + +      P   S + L  P + G  S +  R+  AR K
Sbjct: 240 YNKNNKDQKPKNHEAPHQHPQQKVVPPDDPAIVSHRHLALPRAPGPDSRAAERFFNARRK 299



 Score = 24.2 bits (50), Expect = 7.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 82  NLDSKPPIREKKVEEVRLRAKKQ 104
           +LDSK P   K V EV++  +KQ
Sbjct: 326 SLDSKQPSSTKSVAEVKVADEKQ 348


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 728,398
Number of Sequences: 5004
Number of extensions: 31570
Number of successful extensions: 134
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 126
Number of HSP's gapped (non-prelim): 17
length of query: 143
length of database: 2,362,478
effective HSP length: 67
effective length of query: 76
effective length of database: 2,027,210
effective search space: 154067960
effective search space used: 154067960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)