GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004352-TA|BGIBMGA004352-PA|IPR001965|Zinc finger,
PHD-type, IPR011011|Zinc finger, FYVE/PHD-type
         (76 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   0.98 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   3.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    19   6.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   6.9  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              19   6.9  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    19   6.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    19   9.1  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    19   9.1  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
          protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 0.98
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 48 PLDTPPEGSWSCALCIKEFHQ 68
          PL    E ++ C LC K F Q
Sbjct: 53 PLTNIEEKTYQCLLCQKAFDQ 73


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.2 bits (40), Expect = 3.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 27 DDQLLFCDDCD 37
          DD+LL+C D D
Sbjct: 5  DDELLWCPDND 15


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 6/10 (60%), Positives = 6/10 (60%)

Query: 44  CLAPPLDTPP 53
           C  PP  TPP
Sbjct: 392 CSPPPRQTPP 401


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 49  LDTPPEGSWSCALCIKEFH 67
           LD+ PEG ++    ++E H
Sbjct: 273 LDSLPEGLFASTRDLREIH 291


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 8/24 (33%), Positives = 9/24 (37%)

Query: 14  ECKCCSVCGTSDNDDQLLFCDDCD 37
           EC CC      +    L  C D D
Sbjct: 90  ECYCCRESYLKERHITLHHCYDAD 113


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 8/24 (33%), Positives = 9/24 (37%)

Query: 14  ECKCCSVCGTSDNDDQLLFCDDCD 37
           EC CC      +    L  C D D
Sbjct: 90  ECYCCRESYLKERHITLHHCYDAD 113


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 18.6 bits (36), Expect = 9.1
 Identities = 4/8 (50%), Positives = 8/8 (100%)

Query: 42  MYCLAPPL 49
           M+C++PP+
Sbjct: 102 MFCMSPPM 109


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
          rhodopsin protein.
          Length = 152

 Score = 18.6 bits (36), Expect = 9.1
 Identities = 4/8 (50%), Positives = 8/8 (100%)

Query: 42 MYCLAPPL 49
          M+C++PP+
Sbjct: 68 MFCMSPPM 75


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.141    0.522 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,352
Number of Sequences: 429
Number of extensions: 942
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 76
length of database: 140,377
effective HSP length: 46
effective length of query: 30
effective length of database: 120,643
effective search space:  3619290
effective search space used:  3619290
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.9 bits)
S2: 36 (18.6 bits)