GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004351-TA|BGIBMGA004351-PA|undefined
         (161 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   2.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.9  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 57  TGTPEELVSCSDCG 70
           T  P E+V+C++CG
Sbjct: 418 TTGPNEIVTCTNCG 431


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 57  TGTPEELVSCSDCG 70
           T  P E+V+C++CG
Sbjct: 404 TTGPNEIVTCTNCG 417


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 57  TGTPEELVSCSDCG 70
           T  P E+V+C++CG
Sbjct: 438 TTGPNEIVTCTNCG 451


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 57  TGTPEELVSCSDCG 70
           T  P E+V+C++CG
Sbjct: 387 TTGPNEIVTCTNCG 400


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 49  GDDRENRKTGTPEELVSCSD 68
           G D+EN KT  P + V+  D
Sbjct: 310 GSDKENHKTEEPNDEVATYD 329


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 83  TRPKCYHIENRVCERHRPLRENI 105
           T P   H+ N   ER RPLR  +
Sbjct: 113 TEPLSPHLLNLEVERWRPLRSRL 135


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 78  RPRNGTRPKCYHIENRVCERHRPLRENIKLNGVVE 112
           R ++     CY       ++H+P+  N +LN  V+
Sbjct: 238 RAQSHLEAHCYFDIEPTVQQHQPVTVNRQLNSDVQ 272


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,278
Number of Sequences: 429
Number of extensions: 2538
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 161
length of database: 140,377
effective HSP length: 53
effective length of query: 108
effective length of database: 117,640
effective search space: 12705120
effective search space used: 12705120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)