GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004348-TA|BGIBMGA004348-PA|IPR005373|Protein of unknown
function UPF0183
         (413 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC004556-1|AAH04556.1|  422|Homo sapiens chromosome 16 open read...   395   e-109
AF176088-1|AAK96888.1|  422|Homo sapiens lin-10-like protein pro...   395   e-109
AK022138-1|BAB13968.1|  258|Homo sapiens protein ( Homo sapiens ...   115   3e-25

>BC004556-1|AAH04556.1|  422|Homo sapiens chromosome 16 open reading
           frame 70 protein.
          Length = 422

 Score =  395 bits (972), Expect = e-109
 Identities = 204/411 (49%), Positives = 268/411 (65%), Gaps = 26/411 (6%)

Query: 5   GMHFSQSVAIIQSQVGTIRGVQVLYSDQNPLSVDLVINMPQDGMRLIFDPVAQRLKIIEI 64
           GM  +Q+VAI+Q     I+ VQVLYS+Q+PLS DL++N+ QDG++L+FD   QRLK+IE+
Sbjct: 22  GMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLMFDAFNQRLKVIEV 81

Query: 65  YNMKLVKLRYSGMCFNSPEITPSIEQVEHCFGATHPGLYDSQRHLFALNFRGLSFYFPVD 124
            ++  VKL+Y G+ FNS  I P+IEQ++  FGATHPG+Y+S   LF LNFRGLSF F +D
Sbjct: 82  CDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSFQLD 141

Query: 125 S-----KFEPGYAHGLGSLQFPNGGSPVVSRTTIYYGSQHQLSSNTSSRVSGVPLPDLPL 179
           S     K+EP +AHGL SLQ P+G +  V R  IY G+  Q   +T +       P +PL
Sbjct: 142 SWTEAPKYEPNFAHGLASLQIPHGAT--VKRMYIYSGNSLQ---DTKA-------PMMPL 189

Query: 180 SCYRQQLHLRRCDVLRNTTSTMGLRLHMFTEGTSRAL--EPSQVALVRVVRFGDSCQGVA 237
           SC+   ++    DVLR+ T   GLRL +   G    L  +       R V FGDSCQ V 
Sbjct: 190 SCFLGNVYAESVDVLRDGTGPAGLRLRLLAAGCGPGLLADAKMRVFERSVYFGDSCQDVL 249

Query: 238 RALGAPARLYYKADDKMRIHX-XXXXXXXXXXSDYLFNYFTLGLDVLFDARTNQVKKFVL 296
             LG+P +++YK++DKM+IH            +DY FNYFTLG+D+LFDA T++VKKFVL
Sbjct: 250 SMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDILFDANTHKVKKFVL 309

Query: 297 HTNYPGHYNFNMYHRCEFELTVQPDKSEAHSLVESGGGVAVTAYSKWEVVSRAL-RVCER 355
           HTNYPGHYNFN+YHRCEF++ +   K  A    E+      T YSKW+ +   L    E+
Sbjct: 310 HTNYPGHYNFNIYHRCEFKIPLAIKKENADGQTET-----CTTYSKWDNIQELLGHPVEK 364

Query: 356 PVVLNRASSTNTTNPFGSTFCYGYQDIIFEVMSNNYIASITLYQPDNARPH 406
           PVVL+R+SS N TNPFGSTFC+G Q +IFEVM NN+IAS+TLY P     H
Sbjct: 365 PVVLHRSSSPNNTNPFGSTFCFGLQRMIFEVMQNNHIASVTLYGPPRPGSH 415


>AF176088-1|AAK96888.1|  422|Homo sapiens lin-10-like protein
           protein.
          Length = 422

 Score =  395 bits (972), Expect = e-109
 Identities = 204/411 (49%), Positives = 268/411 (65%), Gaps = 26/411 (6%)

Query: 5   GMHFSQSVAIIQSQVGTIRGVQVLYSDQNPLSVDLVINMPQDGMRLIFDPVAQRLKIIEI 64
           GM  +Q+VAI+Q     I+ VQVLYS+Q+PLS DL++N+ QDG++L+FD   QRLK+IE+
Sbjct: 22  GMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLMFDAFNQRLKVIEV 81

Query: 65  YNMKLVKLRYSGMCFNSPEITPSIEQVEHCFGATHPGLYDSQRHLFALNFRGLSFYFPVD 124
            ++  VKL+Y G+ FNS  I P+IEQ++  FGATHPG+Y+S   LF LNFRGLSF F +D
Sbjct: 82  CDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSFQLD 141

Query: 125 S-----KFEPGYAHGLGSLQFPNGGSPVVSRTTIYYGSQHQLSSNTSSRVSGVPLPDLPL 179
           S     K+EP +AHGL SLQ P+G +  V R  IY G+  Q   +T +       P +PL
Sbjct: 142 SWTEAPKYEPNFAHGLASLQIPHGAT--VKRMYIYSGNSLQ---DTKA-------PMMPL 189

Query: 180 SCYRQQLHLRRCDVLRNTTSTMGLRLHMFTEGTSRAL--EPSQVALVRVVRFGDSCQGVA 237
           SC+   ++    DVLR+ T   GLRL +   G    L  +       R V FGDSCQ V 
Sbjct: 190 SCFLGNVYAESVDVLRDGTGPAGLRLRLLAAGCGPGLLADAKMRVFERSVYFGDSCQDVL 249

Query: 238 RALGAPARLYYKADDKMRIHX-XXXXXXXXXXSDYLFNYFTLGLDVLFDARTNQVKKFVL 296
             LG+P +++YK++DKM+IH            +DY FNYFTLG+D+LFDA T++VKKFVL
Sbjct: 250 SMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDILFDANTHKVKKFVL 309

Query: 297 HTNYPGHYNFNMYHRCEFELTVQPDKSEAHSLVESGGGVAVTAYSKWEVVSRAL-RVCER 355
           HTNYPGHYNFN+YHRCEF++ +   K  A    E+      T YSKW+ +   L    E+
Sbjct: 310 HTNYPGHYNFNIYHRCEFKIPLAIKKENADGQTET-----CTTYSKWDNIQELLGHPVEK 364

Query: 356 PVVLNRASSTNTTNPFGSTFCYGYQDIIFEVMSNNYIASITLYQPDNARPH 406
           PVVL+R+SS N TNPFGSTFC+G Q +IFEVM NN+IAS+TLY P     H
Sbjct: 365 PVVLHRSSSPNNTNPFGSTFCFGLQRMIFEVMQNNHIASVTLYGPPRPGSH 415


>AK022138-1|BAB13968.1|  258|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12076 fis, clone HEMBB1002442, weakly similar to
           LIN-10 PROTEIN. ).
          Length = 258

 Score =  115 bits (277), Expect = 3e-25
 Identities = 52/96 (54%), Positives = 73/96 (76%)

Query: 6   MHFSQSVAIIQSQVGTIRGVQVLYSDQNPLSVDLVINMPQDGMRLIFDPVAQRLKIIEIY 65
           M  +Q+VAI+Q     I+ VQVLYS+Q+PLS DL++N+ QDG++L+FD   QRLK+IE+ 
Sbjct: 1   MPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLMFDAFNQRLKVIEVC 60

Query: 66  NMKLVKLRYSGMCFNSPEITPSIEQVEHCFGATHPG 101
           ++  VKL+Y G+ FNS  I P+IEQ++  FGATHPG
Sbjct: 61  DLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPG 96



 Score = 62.5 bits (145), Expect = 3e-09
 Identities = 34/66 (51%), Positives = 42/66 (63%), Gaps = 7/66 (10%)

Query: 100 PGLYDSQRHLFALNFRGLSFYFPVDS-----KFEPGYAHGLGSLQFPNGGSPVVSRTTIY 154
           P +Y+S   LF LNFRGLSF F +DS     K+EP +AHGL SLQ P+G +  V R  IY
Sbjct: 192 PTVYNSAEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGAT--VKRMYIY 249

Query: 155 YGSQHQ 160
            G+  Q
Sbjct: 250 SGNSLQ 255


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.322    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,564,689
Number of Sequences: 224733
Number of extensions: 2507783
Number of successful extensions: 3952
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3937
Number of HSP's gapped (non-prelim): 4
length of query: 413
length of database: 73,234,838
effective HSP length: 92
effective length of query: 321
effective length of database: 52,559,402
effective search space: 16871568042
effective search space used: 16871568042
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 66 (30.7 bits)