GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004348-TA|BGIBMGA004348-PA|IPR005373|Protein of unknown
function UPF0183
         (413 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    25   1.2  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   4.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   4.8  

>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 383 IFEVMSNNYIASITLYQPDN 402
           I   +SNNYI++I+ Y  DN
Sbjct: 81  IISSLSNNYISNISNYNNDN 100


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 383 IFEVMSNNYIASITLYQPDN 402
           I   +SNNYI++I+ Y  +N
Sbjct: 81  IISSLSNNYISNISNYNNNN 100


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 383 IFEVMSNNYIASITLYQPDN 402
           I   +SNNYI++I+ Y  +N
Sbjct: 319 IISSLSNNYISNISNYNNNN 338


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,017
Number of Sequences: 429
Number of extensions: 4799
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 413
length of database: 140,377
effective HSP length: 59
effective length of query: 354
effective length of database: 115,066
effective search space: 40733364
effective search space used: 40733364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)