GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004347-TA|BGIBMGA004347-PA|IPR000467|D111/G-patch,
IPR011666|Protein of unknown function DUF1604
         (833 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    29   0.12 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               28   0.36 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   5.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   7.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 29.5 bits (63), Expect = 0.12
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 53   FTGGFSAGYMNSVGTP-EGWTPTAFKSSRVDKAQISSQRPEDFMDEEDRGEFGIAPRQVQ 111
            F+  F +  M    T  E WTP        DK   S  R ++ M E  RG        V 
Sbjct: 1135 FSTSFDSKVMTRPDTDSENWTPKMMAVEPTDKQANSKTRRQEMMREAGRGIESAKSYVVD 1194

Query: 112  MRSNFSGQKRS 122
            +R +  G+  S
Sbjct: 1195 VRVHVPGESES 1205


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 27.9 bits (59), Expect = 0.36
 Identities = 36/163 (22%), Positives = 61/163 (37%), Gaps = 22/163 (13%)

Query: 57  FSAGYMNSVGTPEGWTPTAFKSSRVDKAQISSQR--PEDFMDEEDRGEFGIAPRQVQMRS 114
           F AG +   G P+  T         D   I SQ+  P     +++R      P  +  R+
Sbjct: 70  FVAGGIQQAGKPKEETDDK-DDDESDNENIKSQKEFPNSSSSDDER------PNSIHQRA 122

Query: 115 NFSGQKRSRPSQFHEGTIPGEPVLQQLVQAVHET----AAVRMLCAMGWRPGQGTGERL- 169
           +FS       +   +      P+L Q      E        ++L  MG+ PG+G G++L 
Sbjct: 123 SFSLNTDGDIAGLRKKKHKVNPLLMQSGMGSWEVYTKGIGAKLLLQMGFEPGKGLGKQLQ 182

Query: 170 --SVKQKKQATEQHKVYGCYVP------PELRQNSETQEDEDN 204
             S   +    +     G Y P      PE ++  E  E +++
Sbjct: 183 GISTPVEAHLRKGRGAIGAYGPEKGPKVPEKKKEDEIDEGKES 225


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 740 EQKPKDADGQPKVDKVENVPAPDETYGPKIPDNFKPNL---ASQTCKQDVTLEIDS 792
           +Q+ +    QP+  + +      +  GP   D+F PN+   AS + +    L+I S
Sbjct: 831 QQQQQQQQQQPQQQQQQQQQQQQQQRGPMTNDDFNPNIEEEASDSAQGRAILKIPS 886


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 172 KQKKQATEQHKVYGCYVPPELRQ 194
           ++  QAT + K+ G + PP++RQ
Sbjct: 376 QESAQATAELKLGGRFEPPQIRQ 398


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 654 KESEQNKNEGVQVTETINKFDKIDLYKSIFLSDSEDEDVGQTKNNDR 700
           + +E++  + V+  ET ++FD I +     LS S   D G   ++DR
Sbjct: 161 QNAEEDIVDPVEENETYDEFDTIRIPIVRSLSKSPPNDEGIETDSDR 207


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.131    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,741
Number of Sequences: 429
Number of extensions: 12069
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 833
length of database: 140,377
effective HSP length: 63
effective length of query: 770
effective length of database: 113,350
effective search space: 87279500
effective search space used: 87279500
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 48 (23.4 bits)