GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004346-TA|BGIBMGA004346-PA|undefined
         (151 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   0.58 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   3.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   4.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   5.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.4  

>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.58
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 111 HLDKLLNKCLNGDDRFSTVTKLQHVIDDLLNDVKLF 146
           H+ K +    +   R ST   L +V+D   N VKL+
Sbjct: 318 HMQKYVQMIHDLHTRISTAIDLGYVVDSYGNHVKLY 353


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 86  AACYVLAGEEAYLYPIPSQVNASRPHLDKLLNKCLNGDDRFSTVTKLQH 134
           AA     G E   Y IP  +       DK L+K +NGD       +L H
Sbjct: 769 AAAAPFKGMETQDYRIPEVMRRLMSE-DKRLSKSVNGDQSQPPHQQLHH 816


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 115 LLNKCLNGDDRFSTVTK 131
           +LN C+   DRF  +TK
Sbjct: 129 ILNLCMISVDRFCAITK 145


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 25  NERDEVTFVDLEDVIILDKHISP 47
           +ER  VT +D  + I++ +H+SP
Sbjct: 655 SERVHVTNMDQYNSILMIEHLSP 677


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 34  DLEDVIILDKHISPKKDLPHWYQRYI 59
           ++ + IILD++ +P   L H+ Q  I
Sbjct: 172 EIPNSIILDQYTNPGNPLAHYDQTAI 197


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 21  NIVANERDEVTFVDLEDVIILDKHISPKKDLPHWY 55
           +IV N R  +   D  + +ILD  +  K  L  W+
Sbjct: 135 DIVVNFRTGIMQQDNAEQVILDPKLIAKHYLRTWF 169


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 21  NIVANERDEVTFVDLEDVIILDKHISPKKDLPHWY 55
           +IV N R  +   D  + +ILD  +  K  L  W+
Sbjct: 135 DIVVNFRTGIMQQDNAEQVILDPKLIAKHYLRTWF 169


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 21  NIVANERDEVTFVDLEDVIILDKHISPKKDLPHWY 55
           +IV N R  +   D  + +ILD  +  K  L  W+
Sbjct: 135 DIVVNFRTGIMQQDNAEQVILDPKLIAKHYLRTWF 169


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.142    0.459 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,058
Number of Sequences: 429
Number of extensions: 2166
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 151
length of database: 140,377
effective HSP length: 53
effective length of query: 98
effective length of database: 117,640
effective search space: 11528720
effective search space used: 11528720
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 40 (20.2 bits)