GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004345-TA|BGIBMGA004345-PA|undefined
         (49 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   2.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    19   3.5  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    18   8.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           18   8.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 2.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 17   LGGAALGSDEEEIVY 31
            L G   GSD++++VY
Sbjct: 1608 LRGKGHGSDKDDVVY 1622


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 17  LGGAALGSDEEEIVYLAYV 35
           +G A+LG+ +EEI  L+ +
Sbjct: 359 IGLASLGASDEEIEKLSTI 377


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 33  AYVVIDVPTNQSSET 47
           AY+V+D P   S+ T
Sbjct: 468 AYMVVDTPFLASTTT 482


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 33  AYVVIDVPTNQSSET 47
           AY+V+D P   S+ T
Sbjct: 468 AYMVVDTPFLASTTT 482


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,787
Number of Sequences: 429
Number of extensions: 295
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 49
length of database: 140,377
effective HSP length: 30
effective length of query: 19
effective length of database: 127,507
effective search space:  2422633
effective search space used:  2422633
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)