GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004342-TA|BGIBMGA004342-PA|undefined
         (135 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   0.87 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   4.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   4.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   4.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 0.87
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 2   VEWRDPVEEDIERSLESVSRITGSSTNGCLP--ALQVYEAFIADHSDLPQEKQT 53
           V +RD + + I    +    ++G    GC P   +Q  +  + D S   + + T
Sbjct: 945 VNFRDVIAKSISVKFQEGQTVSGGGMGGCQPGGVVQSQQPIMTDPSPFKRGRYT 998


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 37  YEAFIADHSDLPQEKQTRLRHLRN 60
           YEA    H DLP      LR L++
Sbjct: 123 YEAVAVIHKDLPINNVQGLRGLKS 146


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 37  YEAFIADHSDLPQEKQTRLRHLRN 60
           YEA    H DLP      LR L++
Sbjct: 123 YEAVAVIHKDLPINNVQGLRGLKS 146


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 37  YEAFIADHSDLPQEKQTRLRHLRN 60
           YEA    H DLP      LR L++
Sbjct: 123 YEAVAVIHKDLPINNVQGLRGLKS 146


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,117
Number of Sequences: 429
Number of extensions: 1263
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 135
length of database: 140,377
effective HSP length: 52
effective length of query: 83
effective length of database: 118,069
effective search space:  9799727
effective search space used:  9799727
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)