GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004340-TA|BGIBMGA004340-PA|IPR008197|Whey acidic
protein, core region
         (108 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   3.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   3.3  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    20   5.7  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
          protein precursor protein.
          Length = 153

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 7/34 (20%), Positives = 14/34 (41%)

Query: 14 VFYAEAAGTCPLPSKVYGCSPKCKEDYECTHGKV 47
          + + +  G  P P   Y C  +C    + +  K+
Sbjct: 35 IHFLQYPGCVPKPIPSYACRGRCSSYLQVSGSKI 68


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 24  PLPSKVYGCSPKCKEDYEC 42
           P  + +Y C+ +C  D +C
Sbjct: 466 PPGTPIYECNKRCNCDIDC 484


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 65  GGGTGSSSKHATGGTGVYCENVKCNSYEICKRDPMTKRMKCSR 107
           GGG  +SS+  TG              E  +R  ++K  + +R
Sbjct: 285 GGGGTTSSRRTTGSRAAATTTTVYQFIEERQRISLSKERRAAR 327


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,594
Number of Sequences: 429
Number of extensions: 877
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 108
length of database: 140,377
effective HSP length: 50
effective length of query: 58
effective length of database: 118,927
effective search space:  6897766
effective search space used:  6897766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.4 bits)
S2: 38 (19.4 bits)