GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004339-TA|BGIBMGA004339-PA|undefined
         (377 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.80 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.3  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   9.9  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.4 bits (53), Expect = 0.80
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 205 PLNKISKEVTLESLKDLVPEPILEGMFRFYTKKSVLEDTQYYEYKEDKVCRFLARVLLKS 264
           PLNK  K    E  +DL    IL      Y  K   ED+++  Y  D+   F+       
Sbjct: 507 PLNKSLKYSDKE--RDLSLRMILYFSEFAYLGKPTKEDSEWPSYSRDEPKYFIFDAEKTG 564

Query: 265 AGKFNLAEFLQAWSDSVPE 283
            GK     +   W++ +P+
Sbjct: 565 LGKGPRTTYCAFWNEFLPK 583


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 94  RTPRRIEHKDIVNTFFTYYE---LKPCKPRLSKLRKLLESTKYQGPELEYTVNKTELLNH 150
           R PR      ++   F  Y    L   +P+ ++LR ++E      P   Y+ + TEL  H
Sbjct: 323 RGPRTHRMPQLIRKIFLKYLPTILMMRRPKKTRLRWMMEIPNVTLPTSTYSGSPTELPKH 382


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 197 DLIEENSWPLNKISKEVTLESLK 219
           D+IE++ W +N I+   T + +K
Sbjct: 246 DIIEKDDWQINDIALLKTEKDIK 268


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,634
Number of Sequences: 429
Number of extensions: 3847
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 377
length of database: 140,377
effective HSP length: 59
effective length of query: 318
effective length of database: 115,066
effective search space: 36590988
effective search space used: 36590988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 44 (21.8 bits)