GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004337-TA|BGIBMGA004337-PA|IPR001164|Arf GTPase
activating protein
         (390 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 10/58 (17%), Positives = 24/58 (41%)

Query: 107 RRPQNDMSLESFIRAKYEQKKYIAKEWVPPQLPKVNWDKEIDEEMDRQKRKKKSATSS 164
           ++PQ     +   + + +Q++   + W   + P  +W    D  +D   +    + SS
Sbjct: 438 QQPQQQQQQQQQQQQQQQQQQQQQQHWPMEEEPAASWGSASDVTLDEAVKSPLGSVSS 495


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 308 SNAAPQGYCAMPQASTMPYNYQQPFAAPTQQPLQ 341
           SNA  QG+C   Q +     +++P  A  ++  Q
Sbjct: 17  SNAYKQGFCQPTQRTMSKIQWRKPKPAMVEEKTQ 50


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 147 IDEEMDRQKRKKKSATSSLGPLPAPAVADKK 177
           I   ++   RK + A  + GP   P V +KK
Sbjct: 184 ISTPVEAHLRKGRGAIGAYGPEKGPKVPEKK 214


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.128    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,811
Number of Sequences: 429
Number of extensions: 5704
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 390
length of database: 140,377
effective HSP length: 59
effective length of query: 331
effective length of database: 115,066
effective search space: 38086846
effective search space used: 38086846
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)