GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004336-TA|BGIBMGA004336-PA|IPR004827|Basic-leucine
zipper (bZIP) transcription factor, IPR011700|Basic leucine zipper,
IPR008917|Eukaryotic transcription factor, DNA-binding
         (110 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   1.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   1.5  
AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex det...    21   2.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   7.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   7.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   7.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   7.8  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 30  EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQ 72
           EAV++ R ++K+R Q      S L ++  +  E++    K+++
Sbjct: 178 EAVQEERQRTKERDQSEVESTSSLHSDMPI--ERILEAEKRVE 218


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 30  EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQ 72
           EAV++ R ++K+R Q      S L ++  +  E++    K+++
Sbjct: 178 EAVQEERQRTKERDQSEVESTSSLHSDMPI--ERILEAEKRVE 218


>AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 34  KSRFKSKQRTQETFSRVSKLKAENQ 58
           +SR +S QRT    SR   L+ E++
Sbjct: 218 RSRSRSFQRTSSCHSRYEDLRHEDR 242


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated
          chloride channel protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 71 LQFLKDLFFAQAKKD 85
          + +  D+FFAQ  KD
Sbjct: 80 MTYAADIFFAQTWKD 94


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 91  GIDLNKLFEDLPDDRD 106
           G D+NKL+   P D D
Sbjct: 390 GKDINKLYGMTPSDID 405


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 91  GIDLNKLFEDLPDDRD 106
           G D+NKL+   P D D
Sbjct: 390 GKDINKLYGMTPSDID 405


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 91  GIDLNKLFEDLPDDRD 106
           G D+NKL+   P D D
Sbjct: 328 GKDINKLYGMTPSDID 343


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.129    0.338 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,091
Number of Sequences: 429
Number of extensions: 520
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 110
length of database: 140,377
effective HSP length: 50
effective length of query: 60
effective length of database: 118,927
effective search space:  7135620
effective search space used:  7135620
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)
S2: 39 (19.8 bits)