GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004334-TA|BGIBMGA004334-PA|undefined
         (442 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    26   0.55 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   5.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   5.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   5.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.0  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 26.2 bits (55), Expect = 0.55
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 203 NDVCCNLYATTRNVGSTRRAVSASEGLQNTLRRLLEHADSRENVYSPAFGTSHKIYSET 261
           +D+  N  ATT   G    AV A + L NTL  + +H      VY  A  + H++ S T
Sbjct: 173 HDIAVN--ATTGKGGLVSLAVQAID-LANTLVYMADHKGDALIVYQNADDSFHRLTSNT 228


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 355 DPVLSAEGSPAEQLGAISPPAQYAHSAPRYVRSNSHSQPSVRD 397
           +PV+    SP+      S P+    S+P    + +  QPS R+
Sbjct: 502 EPVVETNSSPSPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRN 544


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 322 SFVISRQRASEVVIKNAYPIPSPETSPGHMEL 353
           +F +S     EV+  +A P PS   + GH ++
Sbjct: 356 NFTMSEDGMIEVIPLSAIPEPSKNPAMGHWQM 387


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 162 FYVKSETVLDRKQELPLRMS---SGLGQAIAAGGCHLVSSGTLNNDVCCNLYATTRNVGS 218
           FY  + ++ D K+ + LR S      G     G   L+ S  L+ D+ C + A    +  
Sbjct: 641 FYY-NRSIPDHKRIVKLRGSIIDHSYGGGFGFGSAVLLISDRLSRDLYCGIRAGLSWLER 699

Query: 219 TRRAVSASEGLQNTLRRLLEHAD 241
            + A+   EG++    + L H D
Sbjct: 700 IQIALDVLEGIRYLHSQGLVHRD 722


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 162 FYVKSETVLDRKQELPLRMS---SGLGQAIAAGGCHLVSSGTLNNDVCCNLYATTRNVGS 218
           FY  + ++ D K+ + LR S      G     G   L+ S  L+ D+ C + A    +  
Sbjct: 679 FYY-NRSIPDHKRIVKLRGSIIDHSYGGGFGFGSAVLLISDRLSRDLYCGIRAGLSWLER 737

Query: 219 TRRAVSASEGLQNTLRRLLEHAD 241
            + A+   EG++    + L H D
Sbjct: 738 IQIALDVLEGIRYLHSQGLVHRD 760


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 369  GAISPPAQYAHSAPRYVRSNSHSQP 393
            G + PP  +  +A  + RS S S P
Sbjct: 1757 GTMGPPVGHPTNASAHSRSGSQSMP 1781


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.129    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,188
Number of Sequences: 429
Number of extensions: 5332
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 442
length of database: 140,377
effective HSP length: 60
effective length of query: 382
effective length of database: 114,637
effective search space: 43791334
effective search space used: 43791334
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)