GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004332-TA|BGIBMGA004332-PA|IPR006612|Zinc finger,
C2CH-type, IPR007087|Zinc finger, C2H2-type
         (480 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   3.2  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   7.5  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 251 NRMRIKQEPGYNATPESDDLQNINNRHQIKLEQTMETVKVKQEVENDEYQPQQ 303
           N +  ++   +  T +   +Q    +HQ + +QT   +  +Q  +  + Q QQ
Sbjct: 399 NTLHSEKLLAFKMTEQQQQMQ-AQQQHQQQQQQTQHVINAQQPQQQQQQQQQQ 450


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query: 2  PSSSRLKCHFGCEID 16
          P   +LKC+F C ++
Sbjct: 63 PEDEKLKCYFNCVLE 77


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.128    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,114
Number of Sequences: 429
Number of extensions: 6768
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 2
length of query: 480
length of database: 140,377
effective HSP length: 60
effective length of query: 420
effective length of database: 114,637
effective search space: 48147540
effective search space used: 48147540
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 45 (22.2 bits)