Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA004331-TA|BGIBMGA004331-PA|IPR001179|Peptidylprolyl
isomerase, FKBP-type
(108 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase... 155 1e-39
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 95 2e-21
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 81 3e-17
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac... 25 2.6
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 25 2.6
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 25 3.4
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 24 4.6
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 23 8.0
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 23 8.0
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 23 8.0
>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 112
Score = 155 bits (376), Expect = 1e-39
Identities = 69/107 (64%), Positives = 83/107 (77%)
Query: 1 MGVTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGW 60
MGV + IS G+ +PK G + +HYTGTLTNGKKFDSS DRG PF IG ++IRGW
Sbjct: 1 MGVEKQVISSGNGQDFPKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGW 60
Query: 61 DEGVAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRL 107
DEGV KMS+GE+AKLT +PDY YG +G PG+IPPNSTL+FDVELL +
Sbjct: 61 DEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELLAI 107
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 95.1 bits (226), Expect = 2e-21
Identities = 50/106 (47%), Positives = 66/106 (62%), Gaps = 3/106 (2%)
Query: 2 GVTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWD 61
GV V + G ++ +G+ V + Y G L NGK FD + +GKPF F +G+ EVIRGWD
Sbjct: 258 GVVVTDVKTGSGAS-ATNGKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWD 315
Query: 62 EGVAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRL 107
GVA M G K+T AYG Q PG IP NSTL+F+V+L+R+
Sbjct: 316 VGVAGMQEGGERKITIPAPMAYGNQSIPG-IPKNSTLVFEVKLVRV 360
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 81.4 bits (192), Expect = 3e-17
Identities = 47/103 (45%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 3 VTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDE 62
VTV+ GD K + V + Y G LTNGK FD + GKPF F +G EVI+GWD
Sbjct: 260 VTVQDKVKGDGPA-AKRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDV 317
Query: 63 GVAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELL 105
G+ M VG + AYG + PG IP NS L+FDV+LL
Sbjct: 318 GIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKLL 359
Score = 23.8 bits (49), Expect = 6.0
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 9 SPGDESTYPKSGQTVVVHYTGT--LTNGKKFDSSRDRGKPFKF 49
SPG+E + + G + V+ +GT +TN + + S D F +
Sbjct: 99 SPGEEVFFERVGGDIPVYLSGTCIITNIPEEEDSSDLENDFLY 141
>SPAC16C9.02c |||S-methyl-5-thioadenosine
phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 25.0 bits (52), Expect = 2.6
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 44 GKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCSPDYAY 83
G F R +S + R W + MSV AKL + AY
Sbjct: 176 GPAFSTR-AESNLYRSWGASIINMSVIPEAKLAREAEIAY 214
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 25.0 bits (52), Expect = 2.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 3 VTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDS 39
V+ ++ GD+ +P +GQT+ + T N KK S
Sbjct: 175 VSNRSLEAGDDGVHPTAGQTLNIAPTMNDLNKKKSSS 211
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 24.6 bits (51), Expect = 3.4
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 24 VVHYTGTLTNG-KKFDSSRDRGKPFKFRIGKSEV 56
V H + TN + SSRD G PF ++ +EV
Sbjct: 598 VYHISDDSTNSANSYMSSRDFGHPFVLQLSDNEV 631
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 24.2 bits (50), Expect = 4.6
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 60 WDEGVAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLI 99
+D +S E A C P+ +Y + V+PP+ ++I
Sbjct: 207 FDSKAHVVSENELADYFCLPEESYVMYSNKLVVPPSDSII 246
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 23.4 bits (48), Expect = 8.0
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 65 AKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRL 107
++MS+ E+ K S D + + PGVI ++E L +
Sbjct: 247 SRMSIREKRKHVHSYDEEFEKPNEPGVIVQRCKCGLEIEQLEI 289
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 23.4 bits (48), Expect = 8.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 18 KSGQTVVVHYTGTLTNGKKFDSSR 41
KSG+T + TG+L D SR
Sbjct: 131 KSGETKAIDSTGSLVTDNSTDDSR 154
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 23.4 bits (48), Expect = 8.0
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 1 MGVTVETISPGDESTYPKS 19
M VT E +PG+ESTYP++
Sbjct: 28 MDVT-EFNNPGEESTYPQA 45
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.136 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 509,211
Number of Sequences: 5004
Number of extensions: 18008
Number of successful extensions: 41
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 13
length of query: 108
length of database: 2,362,478
effective HSP length: 64
effective length of query: 44
effective length of database: 2,042,222
effective search space: 89857768
effective search space used: 89857768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 48 (23.4 bits)
- SilkBase 1999-2023 -