GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004331-TA|BGIBMGA004331-PA|IPR001179|Peptidylprolyl
isomerase, FKBP-type
         (108 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.46 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   0.81 
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    20   5.7  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    20   5.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   7.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 0.46
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 70   GERAKLTCSPDYAYGQQGHPGVIPPNST 97
            GER  L  S DY Y  +G  G    +ST
Sbjct: 1579 GERVMLKASEDYRYSVRGLCGNFDHDST 1606


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 0.81
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 49  FRIGKSEVIRGWDEGVAKMSVGERAKLTCSP 79
           FRI   E  R W     K+ + +  KL C P
Sbjct: 249 FRIQVDECDRLWILDSGKVDIAKGGKLACPP 279


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 13  ESTYPKSGQTVVVHYTG 29
           + TYPK    +V  Y G
Sbjct: 99  QRTYPKEWSKIVQQYAG 115


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 13  ESTYPKSGQTVVVHYTG 29
           + TYPK    +V  Y G
Sbjct: 99  QRTYPKEWSKIVQQYAG 115


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 7.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 67  MSVGERAKLTCS 78
           + +GER  LTCS
Sbjct: 622 LHLGERTTLTCS 633


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,953
Number of Sequences: 429
Number of extensions: 1105
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 108
length of database: 140,377
effective HSP length: 50
effective length of query: 58
effective length of database: 118,927
effective search space:  6897766
effective search space used:  6897766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.1 bits)
S2: 38 (19.4 bits)