GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004330-TA|BGIBMGA004330-PA|IPR002048|Calcium-binding
EF-hand
         (208 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              34   8e-04
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   0.91 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   1.2  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   2.1  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   8.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 34.3 bits (75), Expect = 8e-04
 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 2/32 (6%)

Query: 128 VFSLYDRDNNGSIENEELRGFL--KDLLELVK 157
           +FS YDR+NNG++E EEL  F   +DL EL +
Sbjct: 241 MFSHYDRNNNGNLEREELEQFAENEDLEELCR 272



 Score = 21.8 bits (44), Expect = 4.8
 Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 24  IWREYDTDGSGYIEADELKNFLRDLLKEAKKINDVSEDKLIEYTDTMLQVFDSNKDGRLQ 83
           ++  YD + +G +E +EL+ F      E + + ++     + +   M+   D++ DG+L 
Sbjct: 241 MFSHYDRNNNGNLEREELEQF-----AENEDLEELCRGCNLGH---MISYDDTDGDGKLN 292

Query: 84  LSE 86
           ++E
Sbjct: 293 VNE 295


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 118 TKLTKDDIERVFSLYDRDNN 137
           T L+KDD E +  LY RD +
Sbjct: 243 TDLSKDDYESLVHLYTRDQS 262


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 48  LLKEAKKINDVSEDKLIEYTDTMLQVFDSNKDGRL-------QLSEMAKHQSARTSNLRV 100
           L+K   + NDV  +++ +  D+ L V   +K+G L        LS   +HQS    N+ V
Sbjct: 282 LMKSENQGNDVQYERVQDVFDSQLTVKAVSKNGVLLFGLANNTLSCWNEHQSLDRQNIDV 341

Query: 101 VS 102
           V+
Sbjct: 342 VA 343


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)

Query: 154 ELVKKDYDAQDLLEFEE 170
           E V  DYD  D L FEE
Sbjct: 422 ETVSTDYDMSDRLYFEE 438


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding
          protein protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 39 DELKNFLRDLLKEAKKINDVSEDKL 63
          +ELK  +++L K   K ND  ++ L
Sbjct: 4  EELKKTIKNLRKVCSKKNDTPKELL 28


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.133    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,151
Number of Sequences: 429
Number of extensions: 2178
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 208
length of database: 140,377
effective HSP length: 55
effective length of query: 153
effective length of database: 116,782
effective search space: 17867646
effective search space used: 17867646
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)