GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004329-TA|BGIBMGA004329-PA|IPR008161|Collagen helix
repeat, IPR008985|Concanavalin A-like lectin/glucanase,
IPR008160|Collagen triple helix repeat, IPR003129|Laminin G,
Thrombospondin-type, N-terminal
         (420 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.91 

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.4 bits (53), Expect = 0.91
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 234 VNVTGTGVKGEQGPPGPRGYKGDKGETG--SKGDTGD 268
           +  TG G     G  G RG  G++G TG  +K   GD
Sbjct: 75  IEETGRGKGRGHGKGGSRGRGGNRGRTGFNNKNKDGD 111



 Score = 23.0 bits (47), Expect = 4.9
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 251 RGYKGDKGETGSKGDTGDPGPVGFSGIPGVDGKD 284
           RG     G+ GS+G  G+ G  GF+     DG D
Sbjct: 80  RGKGRGHGKGGSRGRGGNRGRTGFNN-KNKDGDD 112


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.138    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,845
Number of Sequences: 429
Number of extensions: 4054
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 420
length of database: 140,377
effective HSP length: 59
effective length of query: 361
effective length of database: 115,066
effective search space: 41538826
effective search space used: 41538826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)