GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004313-TA|BGIBMGA004313-PA|IPR007114|Major facilitator
superfamily, IPR005828|General substrate transporter
         (245 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    29   0.039
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   3.4  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 29.1 bits (62), Expect = 0.039
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 190 SMGLHMVF-WLFSAVCIISTVYIACMVPE--TKMRTLDEIYTEIGGKK 234
           +M L  +F W+F+  C++ TV I    P      + +D  Y++I  KK
Sbjct: 543 AMVLDRIFLWIFTVACVLGTVLIILQAPSLYDTTKPIDIKYSKIAKKK 590


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 195 MVFWLFSAVCIISTVYIACMVPETKMRT--LDEIYTEI 230
           +  W+F+   I+ T  I C  P  +  T  +D  Y+ +
Sbjct: 488 LFLWIFTIASIVGTFIILCEAPALRDNTKPIDMEYSSV 525


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 187 LAASMGLHMVFWLFSAVCIISTVYIACMVPETKMRTLDEI 226
           LAA +G+ MV  +      I +V  A     TK+ TLD I
Sbjct: 148 LAAIVGIVMVLIIHPGDPRIKSVVTAYKADYTKISTLDAI 187


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.330    0.138    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,902
Number of Sequences: 429
Number of extensions: 2178
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 245
length of database: 140,377
effective HSP length: 56
effective length of query: 189
effective length of database: 116,353
effective search space: 21990717
effective search space used: 21990717
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 43 (21.4 bits)