GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004310-TA|BGIBMGA004310-PA|IPR001214|SET, IPR001965|Zinc
finger, PHD-type, IPR011011|Zinc finger, FYVE/PHD-type
         (1430 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    34   0.010
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    31   0.051
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    28   0.48 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    26   1.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   1.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    26   1.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   3.4  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
            methyltransferase protein.
          Length = 683

 Score = 33.9 bits (74), Expect = 0.010
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 974  KDLKENSPVIELRGKYMLSNQHRPQQQNSVRAGSQKPGPFVFFYRLPKDNIQICIDTRTY 1033
            K +K+ S V +  G+ + + +   + +    AG  +   F   Y   ++     +D   Y
Sbjct: 514  KTIKKGSFVTQYVGEVITNEEAEKRGKEYDAAG--RTYLFDLDYNESEEQCPYTVDAAIY 571

Query: 1034 GNEARFVRRSCKPNAELQ----HCIVKGTLHVYLVTISVIQSNTEITVGHDADGTK 1085
            GN + F+  SC PN  +     +C+      + L     I+ N EIT  +    +K
Sbjct: 572  GNISHFINHSCDPNLAVYGVWINCLDPNLPKLALFATKDIKQNEEITFDYMCQSSK 627


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 31.5 bits (68), Expect = 0.051
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 960  TTVPHAGGKILIATKDLKENSPVIE-LRGKYMLSNQHR---PQQQNSVRAGSQKPGPFVF 1015
            T V +  GK ++ T ++K+ SP    L GK +L++Q +   P Q  S+  G    G  +F
Sbjct: 989  TIVTNQAGKSILQTANIKQQSPQQHVLPGKTLLASQIKLVSPGQIKSLLTGHGLQGQTIF 1048

Query: 1016 FYRLPKDN 1023
              + P  N
Sbjct: 1049 IKQSPSSN 1056


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 28.3 bits (60), Expect = 0.48
 Identities = 23/126 (18%), Positives = 56/126 (44%), Gaps = 2/126 (1%)

Query: 69  IRSIHQVDKEIDYHISEKRCDSEMSVETLSGIVRIEENIDNVGHIAYPVLQEADDSSDGH 128
           +R +H ++  ++ ++     +S  S++ L  +   E  + ++  I     +++DD SDG+
Sbjct: 146 LRELHTLEI-VESNVQALPVNSLCSLDNLQTLNLTENRLRDINDIGLN-RRDSDDGSDGN 203

Query: 129 YVENSTALIQAPISTAIVQNVTKLPQNFTINVDAAVGNITTIQNVAQDVAGSPTLWLPTI 188
             + S+      I       +T+L +N  +     +  +   +N   ++AG     L  +
Sbjct: 204 DGDESSCRADIRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVL 263

Query: 189 LTTSAA 194
            T +A+
Sbjct: 264 RTFNAS 269


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 32  NLINMNVPSI--RTPVLRTVPVSPTQRDPEPDSTNPESIIRSIHQVDKEIDYHISEKRCD 89
           N +   +P++  R  ++   P+      P   +T P  I+   +        H +   C 
Sbjct: 372 NPVTQRLPAVLSRIGIILASPLKREGGPPTGATTGPNEIVTCTNCGPNPCT-HTTTNGCT 430

Query: 90  SEMSVETLSGIVRIEENIDNVGHIAYPV 117
           +E+  +     +R+ + ID +  I +PV
Sbjct: 431 AELRKKEPPHPIRVAKTIDVIARITFPV 458


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)

Query: 875 PKKPDVMRKGAKR----KLSEKRVKRKKEMLLNRTKYSS 909
           P  P  + K +K+    KL  K+VK+ K+++LN  K S+
Sbjct: 676 PSLPSTLTKNSKQGLFSKLFAKKVKKDKDIILNVPKEST 714


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 1035 NEARFVRRSCKPNAELQHCIVKGTLHVYLVTISVIQSNTEITVG 1078
            N+   VR S +   EL + ++ G L  YLVT +++   T+I  G
Sbjct: 682  NDTPVVRASGR---ELSYVLLSGILLCYLVTFALVLRPTDIVCG 722


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase protein.
          Length = 588

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 1170 LSPFKQEKLSPIKDEYP 1186
            + P K +K +PIKD+YP
Sbjct: 152  VDPVKDDKGNPIKDKYP 168


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.128    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 356,314
Number of Sequences: 429
Number of extensions: 14716
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 9
length of query: 1430
length of database: 140,377
effective HSP length: 66
effective length of query: 1364
effective length of database: 112,063
effective search space: 152853932
effective search space used: 152853932
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 50 (24.2 bits)