GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004309-TA|BGIBMGA004309-PA|IPR000637|HMG-I and HMG-Y,
DNA-binding
         (596 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      27   0.33 
X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       26   1.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   3.1  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            24   4.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   7.1  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   9.4  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    23   9.4  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   9.4  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 0.33
 Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 9/127 (7%)

Query: 299 LRTMCEMLDLDKKGSASELA--GRLVGFLQQPTANSPHARGVARPPPA-PTSTPGGRPRR 355
           L    +  D D+      LA  G  + F ++   + P  RG + P P  PT T   +  R
Sbjct: 115 LTQQADQTDRDELSHVRALAAGGNHLPFHEKLVESFP--RGGSLPTPVTPTPTTVQQLLR 172

Query: 356 SAAVKVHNRGYSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPEAGEG 415
            A ++ + R   D   ET  +P+V  P      +  +D S     +  +        G G
Sbjct: 173 RAQIRRNERRTPDPHDETAKKPRVLSPPLNNNDATPTDFSMGVKNNHVSSK----VEGNG 228

Query: 416 VAKKRAP 422
           V ++ +P
Sbjct: 229 VHEENSP 235


>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 398 PSGSEEADSDFDPEAGEGVAKK 419
           P    EAD++ DPEAG G   K
Sbjct: 29  PEPEAEADAEADPEAGIGAVLK 50


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 11  SDNQDEDKKSSPGDGQTTEDESSQDSKGESLRFQDSEAQGNADVDQP---DAKEENLEGD 67
           +DNQ+ +K++    G    D    D+K    R  D++  GN   D     + +  N + D
Sbjct: 447 ADNQNANKQN----GNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQND 502

Query: 68  VKTTAN 73
            K   N
Sbjct: 503 NKQNGN 508



 Score = 23.8 bits (49), Expect = 4.1
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 9   KISDNQDEDKKSSPGDGQTTEDESSQDSKGESLRFQDSEAQGNADVDQPDAKEENLEGD 67
           K + N+  D K +   G         D+K    R  D++  GN   D  + + +N   D
Sbjct: 479 KQNGNRQNDNKQN---GNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRND 534


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 270 KKFKGYEWAIGSSDYKAKLE 289
           K F+ +EW +G+   K+K+E
Sbjct: 67  KFFQVHEWPVGNDTLKSKME 86


>AF388659-3|AAK71993.1|  548|Apis mellifera
          1D-myo-inositol-trisphosphate 3-kinaseisoform C
          protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 8  AKISDNQDEDKKSSPGDGQTT----EDESSQDSKGESLRFQDSEAQGNADVDQPDAKEEN 63
          + I D +      SP     T    +D + + SK      QD+E     +++  ++KE N
Sbjct: 30 SSIVDRRSPSSSRSPSPSLLTSQPHQDHNKEKSKNNHHCNQDTEKLNQLEIESDNSKEVN 89


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 25  GQTTEDESSQDSKGESLRFQDSEAQGNADVDQPD 58
           G+ + +E   + K ++ RFQDS ++    +D P+
Sbjct: 119 GKKSLEEILDEIKKKTTRFQDSRSKDVYLIDYPE 152


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 25  GQTTEDESSQDSKGESLRFQDSEAQGNADVDQPD 58
           G+ + +E   + K ++ RFQDS ++    +D P+
Sbjct: 119 GKKSLEEILDEIKKKTTRFQDSRSKDVYLIDYPE 152


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 25  GQTTEDESSQDSKGESLRFQDSEAQGNADVDQPD 58
           G+ + +E   + K ++ RFQDS ++    +D P+
Sbjct: 119 GKKSLEEILDEIKKKTTRFQDSRSKDVYLIDYPE 152


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.306    0.127    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,624
Number of Sequences: 429
Number of extensions: 4877
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 9
length of query: 596
length of database: 140,377
effective HSP length: 62
effective length of query: 534
effective length of database: 113,779
effective search space: 60757986
effective search space used: 60757986
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 46 (22.6 bits)