GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004308-TA|BGIBMGA004308-PA|IPR002110|Ankyrin,
IPR005821|Ion transport
         (999 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    29   0.19 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    26   1.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    24   5.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 29.1 bits (62), Expect = 0.19
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 804 KQTTPDLLVNGKTSNAPILTTGTQMPKVSSKTLGTPVARIEASSLKTPLDVKLN-PTTLT 862
           K+TTP       T+  P++++  +  K   K +       E S + T +   +N PTT  
Sbjct: 787 KETTPKKERKTATTTQPVISSRKEQKKSEEKNINDHCVTTEQSVVVTNVTTTINTPTTSV 846

Query: 863 QSTVQGNIGNVNIPISGVKITT 884
            S     +   ++P S   I +
Sbjct: 847 ISMSGTTVPITSLPASSTSINS 868



 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 880 VKITTNVGQNSAVVPEIQQSNENQK 904
           +K   + G N  + PE ++  EN K
Sbjct: 304 IKTELSTGMNDDIPPETEEEEENDK 328


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 186 LVQDLVEAGADV-NQRAIGSFFLPRDQQRVPPARQTNYEGLAYLGEYPLAWTACCANEAV 244
           +V DL   G ++ N ++ G  F   ++   P   QTN +   Y    PL+ T       +
Sbjct: 348 VVVDLPGVGENLHNHQSFGMDF-SLNEDFYPTFNQTNVDQYLYNQTGPLSSTGLAQVTGI 406

Query: 245 YNLLLDSGADPDAQDSF 261
           ++  L +  DPD Q  F
Sbjct: 407 WHSNLTTPDDPDIQIFF 423


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 11/43 (25%), Positives = 16/43 (37%)

Query: 869 NIGNVNIPISGVKITTNVGQNSAVVPEIQQSNENQKPEQVHQD 911
           N   VN  I G  +   +          Q +N+N+   Q H D
Sbjct: 395 NFDEVNFRILGANVNNLIKNTRCAKSNNQNNNQNKYKNQAHLD 437


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,140
Number of Sequences: 429
Number of extensions: 10594
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 5
length of query: 999
length of database: 140,377
effective HSP length: 64
effective length of query: 935
effective length of database: 112,921
effective search space: 105581135
effective search space used: 105581135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)