GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004306-TA|BGIBMGA004306-PA|undefined
         (866 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    31   0.053
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     25   3.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   4.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   4.6  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 30.7 bits (66), Expect = 0.053
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 150 TRKLGRRSEQNTETNGMIIEIKSEPKDFEDLAEPLQTIK 188
           T ++ R    NT+   +     S P+D +DL EPL TI+
Sbjct: 257 TLRIHRGGGTNTDARHLFRTASSTPEDLQDLEEPLTTIQ 295


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 396 GRNLKDSLKQLNITEIQTDVNKTTNRINSDISNTMNNTLFLESKS 440
           G N+ +  K  NI +++  +  T N+I   +     N L  ESK+
Sbjct: 160 GNNITN-FKNSNIFQLKQHMRDTMNKIAETLDEDTKNKLIEESKT 203


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 535 NVPDHGAVSDTATRVPSTIASRSSTNIR--LVNPDHLMSLSKCYTTN 579
           N P    +S + T VP T    SST+I    V  D +  +    TTN
Sbjct: 840 NTPTTSVISMSGTTVPITSLPASSTSINSITVEKDVINDVKTQITTN 886


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 701 KTMLKKNKSIPNVEIQTCRSPAQNTTKIVSAVELLSERNYSPANDS 746
           K++L+K   +  VE+     P ++    V+ VE       +P +DS
Sbjct: 111 KSILEKKPDVTTVELVDATDPGEHNGDTVTDVEAGLASRTNPLDDS 156


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.126    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,457
Number of Sequences: 429
Number of extensions: 10698
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 5
length of query: 866
length of database: 140,377
effective HSP length: 64
effective length of query: 802
effective length of database: 112,921
effective search space: 90562642
effective search space used: 90562642
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 48 (23.4 bits)