GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004304-TA|BGIBMGA004304-PA|undefined
         (723 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    29   0.18 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    27   0.71 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   1.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   1.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   5.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   5.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   8.8  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 28.7 bits (61), Expect = 0.18
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 43  DLDNETREHGRRSEENTETNRMIIEIKSEPRDFEDLADPLQTIK 86
           +L+   R H R    NT+   +     S P D +DL +PL TI+
Sbjct: 253 ELELTLRIH-RGGGTNTDARHLFRTASSTPEDLQDLEEPLTTIQ 295


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 26.6 bits (56), Expect = 0.71
 Identities = 13/47 (27%), Positives = 23/47 (48%)

Query: 568 ILNNMLVKMDEDEHNSSRVTFGISSQILKPNTKNTMLMKNKSIPNVE 614
           +L+N + K+  D+ N   V F I    +K   +NT  + N    N++
Sbjct: 378 VLSNRMQKIVNDDFNFDDVNFRILGANVKELIRNTHCVNNNQNDNIQ 424


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 43/202 (21%), Positives = 89/202 (44%), Gaps = 21/202 (10%)

Query: 521 QTNNESIAATPELKSNLSCTVKETGISSKK--KPRQELSVVNDCILTHD--ILNNMLVKM 576
           Q+ N +   TP+ K   + T  +  ISS+K  K  +E ++ + C+ T    ++ N+   +
Sbjct: 781 QSPNSTKETTPK-KERKTATTTQPVISSRKEQKKSEEKNINDHCVTTEQSVVVTNVTTTI 839

Query: 577 DEDEH---NSSRVTFGISSQILKPNTKNTMLMKNKSIPNVEIQ-PCRSPAQNTTKMVS-- 630
           +       + S  T  I+S      + N++ ++   I +V+ Q    +PA+  T +    
Sbjct: 840 NTPTTSVISMSGTTVPITSLPASSTSINSITVEKDVINDVKTQITTNTPAKKATNIGGKP 899

Query: 631 -AVELLSERNYSAANDSPIMADNIVIDSES--QIVK----PVF--AQELYQTDKHEIINK 681
            AV   S ++   +N        I + + +  Q ++     V   AQ +  +    + N 
Sbjct: 900 VAVVKSSAQSLLQSNQQHFPHHQIQVSTSAGLQTIRLSGHSVLHSAQSVVASSASNVTNV 959

Query: 682 TSNVKTLVIEPIFNHVAEQSKQ 703
           T+N+ T ++ P+     +QS+Q
Sbjct: 960 TTNL-TTILPPVKVQSQQQSQQ 980


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 56  EENTETNRMIIEIKSEPRDFEDLADPLQTIKT 87
           E+N   N++ ++ K E    ED+ DP++  +T
Sbjct: 145 EKNAGNNKITMKSKKEQNAEEDIVDPVEENET 176


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 209 IILKSEMEEQLQLNIFDNVIEFADNNVQSIENEHVNTAHVIQTKNDFTLQSQLSYK 264
           I LK E  +  + NI DN  +  ++   +I  E V+    +  K+D  +   +  K
Sbjct: 259 IQLKKEEYKSGKRNIIDNSAQKTESKTNNIVVEGVSFGQSVGLKDDLDIDDDVGEK 314


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 154 VYGNVHDCQEIKDPRATKVCEDKPM 178
           +Y N+ +  E+     TKV ED+P+
Sbjct: 648 MYANMIETMELTSLLLTKVAEDRPL 672


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 201 EKVLQETNIILKSEMEEQLQLNIFDNVIEFADNNVQSIENEHVNTAHVIQTKNDFTLQSQ 260
           +KV ++ +IIL    E    L    NV     NN  +     +  A ++ T +  +L+ +
Sbjct: 697 KKVKKDKDIILNVPKESTQSLTTTGNVSYLTTNNTSNNSQLQIPRASLVSTTSVKSLRLE 756

Query: 261 LSYKNGNSTPTF 272
                G+ TP +
Sbjct: 757 -----GDETPPY 763


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.128    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,311
Number of Sequences: 429
Number of extensions: 9864
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 8
length of query: 723
length of database: 140,377
effective HSP length: 63
effective length of query: 660
effective length of database: 113,350
effective search space: 74811000
effective search space used: 74811000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)