GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004302-TA|BGIBMGA004302-PA|IPR003029|RNA binding S1,
IPR011488|Eukaryotic translation initiation factor 2, alpha subunit,
IPR008994|Nucleic acid-binding, OB-fold
         (332 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   1.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/71 (19%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 83  DLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEELYKKTAWYFEEKYK 142
           D+ +    ++ I + TE   K   ++S++    + LHYET   +    ++  W +  + +
Sbjct: 678 DICQLLKDSQYIREQTESDDKEGYLHSVVSGALDRLHYETDPCVRYYPRRKEWLYLHRAR 737

Query: 143 KKASAYDFFKQ 153
            + S ++ + Q
Sbjct: 738 SE-SEFEMYHQ 747


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 295 NAEVAGDSAEEDEDQGMGDANMDGE 319
           N E  G+  E+D+D G  D + D E
Sbjct: 382 NGEAVGEVDEDDDDDGDDDDDDDVE 406


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.130    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,402
Number of Sequences: 429
Number of extensions: 2850
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 332
length of database: 140,377
effective HSP length: 58
effective length of query: 274
effective length of database: 115,495
effective search space: 31645630
effective search space used: 31645630
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)