GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004301-TA|BGIBMGA004301-PA|IPR001841|Zinc finger,
RING-type
         (310 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   2.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.9  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 61  DAGLMSQCFGPCPSEVIQGRIRQYLLSN 88
           D  L +Q F  C  + ++  I QY++SN
Sbjct: 109 DKCLTAQKFSRCVIDYVKFHITQYMISN 136


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 180  LDKVTKALIMEPLFRIDGLDFMLGKTKDKSFSFYRYP 216
            LD   + L++  +F  D    ML KT+ ++F    YP
Sbjct: 1424 LDTADEDLLINNVFYEDETSCMLDKTRAQTFDGKDYP 1460


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 4    IEELLRPYQNRAWAQSNWVLVRFW 27
            ++  LRPY   A A   W   RFW
Sbjct: 1174 LDRELRPYLRTAAAILTWNEKRFW 1197


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 11/31 (35%), Positives = 13/31 (41%)

Query: 251 GAQSDLLCTICYARPADTAFVPCGHHSCRAC 281
           G Q+D+    C   P        G HSC AC
Sbjct: 252 GYQADVEKQECTECPIGKFKHEAGSHSCEAC 282


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.136    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,532
Number of Sequences: 429
Number of extensions: 3461
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 310
length of database: 140,377
effective HSP length: 58
effective length of query: 252
effective length of database: 115,495
effective search space: 29104740
effective search space used: 29104740
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)