GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004298-TA|BGIBMGA004298-PA|IPR001870|B302, (SPRY)-like,
IPR003877|SPla/RYanodine receptor SPRY
         (380 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          25   1.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   1.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   7.6  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 330 VLRSIVRKPWWQRPTS-VQGETDPRVVGKEYSRVIWID 366
           V+ +I RK WW RP    Q  +   +  K+    +W D
Sbjct: 36  VVNNIKRKRWWSRPREPAQTTSKAGIHRKKVLLSVWWD 73


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 324 KCPDDNVLRSIVRKPWWQRPTSVQGETDP 352
           K PD ++ +S VRK    +P   Q +T P
Sbjct: 231 KLPDTSMAKSFVRKVHATKPPKPQTKTKP 259


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 121 KSLDALVDELSRPSDLKSGVTAKTSKVKSETSRVQEEEVALRIHSSQSAY 170
           K+L  ++D+ S+  D    V A   ++  ET+++  +E A      Q  Y
Sbjct: 356 KNLSKVIDQHSQLIDTLENVLAIVDRLMDETNQLTLQETADAFKDLQDKY 405


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 53  YRNGVSLGVAFDK 65
           + NGV +G+ FDK
Sbjct: 166 FENGVEIGINFDK 178


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,038
Number of Sequences: 429
Number of extensions: 3464
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 4
length of query: 380
length of database: 140,377
effective HSP length: 59
effective length of query: 321
effective length of database: 115,066
effective search space: 36936186
effective search space used: 36936186
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)