GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004294-TA|BGIBMGA004294-PA|undefined
         (118 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   1.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   1.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.0  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    20   8.7  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 72  IQATEVGATQYASAWILSGGLSQNN 96
           + A ++   ++   W+L  GL  NN
Sbjct: 128 VSAFKIAVDKFDRLWVLDSGLVNNN 152


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 2   NTILVFALVVLAATNAAILPSSTRANLIV 30
           NTI+  + +V    NA I  SS  +NL V
Sbjct: 513 NTIVDISKLVNKRNNAKIYTSSVNSNLTV 541


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 55 QYQDIVYRGNATTRITAIQA 74
          QYQD +Y G  ++     QA
Sbjct: 48 QYQDTLYSGTRSSESLTAQA 67


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 83  ASAWILSGGLS 93
           A  WILSG +S
Sbjct: 158 AGVWILSGAIS 168


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,496
Number of Sequences: 429
Number of extensions: 1099
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 118
length of database: 140,377
effective HSP length: 51
effective length of query: 67
effective length of database: 118,498
effective search space:  7939366
effective search space used:  7939366
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)